High number of candidate gene variants are identified as disease‐causing in a period of 4 years

Author:

Hills Sonia12ORCID,Li Qifei123,Madden Jill A.12,Genetti Casie A.12,Brownstein Catherine A.124,Schmitz‐Abe Klaus12345,Beggs Alan H.1245ORCID,Agrawal Pankaj B.123ORCID

Affiliation:

1. Division of Genetics and Genomics Boston Children's Hospital Boston Massachusetts USA

2. The Manton Center for Orphan Disease Research Boston Children's Hospital Boston Massachusetts USA

3. Division of Neonatology, Department of Pediatrics University of Miami Miller School of Medicine and Jackson Health System Miami Florida USA

4. Department of Pediatrics Harvard Medical School Boston Massachusetts USA

5. Broad Institute of MIT and Harvard Cambridge Massachusetts USA

Abstract

AbstractAdvances in bioinformatic tools paired with the ongoing accumulation of genetic knowledge and periodic reanalysis of genomic sequencing data have led to an improvement in genetic diagnostic rates. Candidate gene variants (CGVs) identified during sequencing or on reanalysis but not yet implicated in human disease or associated with a phenotypically distinct condition are often not revisited, leading to missed diagnostic opportunities. Here, we revisited 33 such CGVs from our previously published study and determined that 16 of them are indeed disease‐causing (novel or phenotype expansion) since their identification. These results emphasize the need to focus on previously identified CGVs during sequencing or reanalysis and the importance of sharing that information with researchers around the world, including relevant functional analysis to establish disease causality.

Funder

National Institutes of Health

Publisher

Wiley

Subject

Genetics (clinical),Genetics

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