Vinyl Halide‐Modified Unsaturated Cyclitols are Mechanism‐Based Glycosidase Inhibitors

Author:

Danby Phillip M.1,Jeong Andrew1,Sim Lyann12,Sweeney Ryan P.1,Wardman Jacob F.3,Karimi Ryan1,Geissner Andreas1,Worrall Liam J.3,Reid Jolene. P.1,Strynadka Natalie C. J.3,Withers Stephen G.132ORCID

Affiliation:

1. Department of Chemistry University of British Columbia Vancouver BC V6T 1Z1 Canada

2. Michael Smith Laboratories University of British Columbia Vancouver BC V6T 1Z4 Canada

3. Department of Biochemistry and Molecular Biology University of British Columbia Vancouver BC V6T 1Z3 Canada

Abstract

AbstractSuitably configured allyl ethers of unsaturated cyclitols act as substrates of β‐glycosidases, reacting via allylic cation transition states. Incorporation of halogens at the vinylic position of these carbasugars, along with an activated leaving group, generates potent inactivators of β‐glycosidases. Enzymatic turnover of these halogenated cyclitols (F, Cl, Br) displayed a counter‐intuitive trend wherein the most electronegative substituents yielded the most labile pseudo‐glycosidic linkages. Structures of complexes with the Sulfolobus β‐glucosidase revealed similar enzyme‐ligand interactions to those seen in complexes with a 2‐fluorosugar inhibitor, the lone exception being displacement of tyrosine 322 from the active site by the halogen. Mutation of Y322 to Y322F largely abolished glycosidase activity, consistent with lost interactions at O5, but minimally affected (7‐fold) rates of carbasugar hydrolysis, yielding a more selective enzyme for unsaturated cyclitol ether hydrolysis.

Funder

Natural Sciences and Engineering Research Council of Canada

Canadian Institutes of Health Research

Division of Cancer Epidemiology and Genetics, National Cancer Institute

National Institute of General Medical Sciences

Publisher

Wiley

Subject

General Chemistry,Catalysis

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