A Semisynthesis Platform for the Efficient Production and Exploration of Didemnin‐Based Drugs

Author:

Zhang Haili1,Li Xuyang1,Hui Zhen1,Huang Shipeng12,Cai Mingwei1,Shi Wenguang1,Lin Yang1,Shen Jie3,Sui Minghao3,Lai Qiliang4,Shao Zongze4,Dou Jie3,Luo Xiaozhou5,Ge Yun16,Tang Xiaoyu1ORCID

Affiliation:

1. Institute of Chemical Biology Shenzhen Bay Laboratory 518132 Shenzhen China

2. Department of Chemistry and Shenzhen Grubbs Institute Southern University of Science and Technology 518000 Shenzhen China

3. College of Life Science and Technology China Pharmaceutical University 211198 Nanjing China

4. Key Laboratory of Marine Genetic Resources Third Institute of Oceanography, Ministry of Natural Resources 184 Daxue Road 361005 Xiamen China

5. Center for Synthetic Biochemistry Shenzhen Institute of Synthetic Biology Shenzhen Institute of Advanced Technology Chinese Academy of Sciences 518055 Shenzhen China

6. State Key Laboratory of Chemical Oncogenomics School of Chemical Biology and Biotechnology Peking University Shenzhen Graduate School 518055 Shenzhen China

Abstract

AbstractPlitidepsin (or dehydrodidemnin B), an approved anticancer drug, belongs to the didemnin family of cyclic depsipeptides, which are found in limited quantities in marine tunicate extracts. Herein, we introduce a new approach that integrates microbial and chemical synthesis to generate plitidepsin and its analogues. We screened a Tistrella strain library to identify a potent didemnin B producer, and then introduced a second copy of the didemnin biosynthetic gene cluster into its genome, resulting in a didemnin B titer of approximately 75 mg/L. Next, we developed two straightforward chemical strategies to convert didemnin B into plitidepsin, one of which involved a one‐step synthetic route giving over 90 % overall yield. Furthermore, we synthesized 13 new didemnin derivatives and three didemnin probes, enabling research into structure–activity relationships and interactions between didemnin and proteins. Our study highlights the synergistic potential of biosynthesis and chemical synthesis in overcoming the challenge of producing complex natural products sustainably and at scale.

Funder

National Natural Science Foundation of China

Key Technologies Research and Development Program

Publisher

Wiley

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