Pilot validation of on‐field STR typing and human identity testing by MinION nanopore sequencing

Author:

Luo Yuan1ORCID,Zhang Jiarong23ORCID,Ni Ming4,Mei Zhusong1,Ye Qiao1,Guo Bingqian1,Fang Longmei1,Feng Dongyun1,Wang Lu1,Yan Jiangwei23,Wang Guangyun1

Affiliation:

1. Laboratory of Clinical Medicine, Air Force Medical Center Air Force Medical University, PLA Beijing P. R. China

2. School of Forensic Medicine Shanxi Medical University Jinzhong Shanxi P. R. China

3. Shanxi Key Laboratory of Forensic Medicine Jinzhong Shanxi P. R. China

4. Institute of Health Service and Transfusion Medicine Beijing P. R. China

Abstract

AbstractNanopore sequencing technology has broad application prospects in forensic medicine due to its small size, portability, fast speed, real‐time result analysis capabilities, single‐molecule sequencing abilities, and simple operation. Here, we demonstrate for the first time that nanopore sequencing platforms can be used to identify individuals in the field. Through scientific and reasonable design, a nanopore MinION MK1B device and other auxiliary devices are integrated into a portable detection box conducive to individual identification at the accident site. Individual identification of 12 samples could be completed within approximately 24 h by jointly detecting 23 short tandem repeat (STR) loci. Through double‐blinded experiments, the genotypes of 49 samples were successfully determined, and the accuracy of the STR genotyping was verified by the gold standard. Specifically, the typing success rate for 1150 genotypes was 95.3%, and the accuracy rate was 86.87%. Although this study focused primarily on demonstrating the feasibility of full‐process testing, it can be optimistically predicted that further improvements in bioinformatics workflows and nanopore sequencing technology will help enhance the feasibility of Oxford Nanopore Technologies equipment for real‐time individual identification at accident sites.

Publisher

Wiley

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