Control of fibrosis with enhanced safety via asymmetric inhibition of prolyl‐tRNA synthetase 1

Author:

Yoon Ina12,Kim Sulhee3,Cho Minjae4,You Kyung Ah1,Son Jonghyeon3,Lee Caroline4,Suh Ji Hun12,Bae Da‐Jeong4,Kim Jong Min4,Oh Sinae1ORCID,Park Songhwa1,Kim Sanga1,Cho Seong Hyeok1ORCID,Park Seonha3,Bang Kyuhyeon3,Seo Minjeong3,Kim Jong Hyun15,Lee Bongyong4ORCID,Park Joon Seok4ORCID,Hwang Kwang Yeon3ORCID,Kim Sunghoon126ORCID

Affiliation:

1. Institute for Artificial Intelligence and Biomedical Research, Medicinal Bioconvergence Research Center Yonsei University Incheon Korea

2. Yonsei Institute of Pharmaceutical Sciences College of Pharmacy, Yonsei University Incheon Korea

3. Department of Biotechnology College of Life Sciences and Biotechnology, Korea University Seoul Korea

4. Drug Discovery Center, Daewoong Pharmaceutical Co., Ltd Yongin Korea

5. Department of Biochemistry, School of Medicine Catholic University of Daegu Daegu Korea

6. College of Medicine, Gangnam Severance Hospital Yonsei University Seoul Korea

Abstract

AbstractProlyl‐tRNA synthetase 1 (PARS1) has attracted much interest in controlling pathologic accumulation of collagen containing high amounts of proline in fibrotic diseases. However, there are concerns about its catalytic inhibition for potential adverse effects on global protein synthesis. We developed a novel compound, DWN12088, whose safety was validated by clinical phase 1 studies, and therapeutic efficacy was shown in idiopathic pulmonary fibrosis model. Structural and kinetic analyses revealed that DWN12088 binds to catalytic site of each protomer of PARS1 dimer in an asymmetric mode with different affinity, resulting in decreased responsiveness at higher doses, thereby expanding safety window. The mutations disrupting PARS1 homodimerization restored the sensitivity to DWN12088, validating negative communication between PARS1 promoters for the DWN12088 binding. Thus, this work suggests that DWN12088, an asymmetric catalytic inhibitor of PARS1 as a novel therapeutic agent against fibrosis with enhanced safety.

Funder

Korea Drug Development Fund

Yonsei University

Publisher

Springer Science and Business Media LLC

Subject

Molecular Medicine

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