Probabilistic harmonization and annotation of single‐cell transcriptomics data with deep generative models-Reference-Cited by-同舟云学术

Probabilistic harmonization and annotation of single‐cell transcriptomics data with deep generative models

Published:2021-01 Issue:1 Volume:17 Page:
ISSN:1744-4292
Container-title:Molecular Systems Biology
language:en
Short-container-title:Mol Syst Biol

Author:

Xu Chenling¹^ORCID,Lopez Romain²^ORCID,Mehlman Edouard²³^ORCID,Regier Jeffrey⁴^ORCID,Jordan Michael I²⁵^ORCID,Yosef Nir¹²⁶⁷^ORCID

Affiliation:

1. Center for Computational Biology University of California Berkeley CA USA

2. Department of Electrical Engineering and Computer Sciences University of California Berkeley CA USA

3. Centre de Mathématiques Appliquées École polytechnique Palaiseau France

4. Department of Statistics University of Michigan Ann Arbor MI USA

5. Department of Statistics University of California Berkeley CA USA

6. Ragon Institute of MGHMIT and Harvard Boston MA USA

7. Chan‐Zuckerberg Biohub Investigator San Francisco CA USA

Funder

Division of Intramural Research, National Institute of Allergy and Infectious Diseases

National Institute of Mental Health

Publisher

EMBO

Subject

Applied Mathematics,Computational Theory and Mathematics,General Agricultural and Biological Sciences,General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,Information Systems

Link

https://onlinelibrary.wiley.com/doi/pdf/10.15252/msb.20209620

Reference80 articles.

1. Magan: Aligning biological manifolds;Amodio M;Proc Int Conf Mach Learn,2018

2. Exploring single‐cell data with deep multitasking neural networks;Amodio M;Nat Meth,2019

3. M3Drop: dropout-based feature selection for scRNASeq

4. Single cells make big data: New challenges and opportunities in transcriptomics

5. A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure

Cited by 262 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Modeling Cortical Versus Hippocampal Network Dysfunction in a Human Brain Assembloid Model of Epilepsy and Intellectual Disability;2024-09-08

2. Artificial intelligence in cell annotation for high-resolution RNA sequencing data;TrAC Trends in Analytical Chemistry;2024-09

3. Adaptive Responses to PARP Inhibition Predict Response to Olaparib and Durvalumab: Multi-omic Analysis of Serial Biopsies in the AMTEC Trial;2024-08-30

4. VISTA Uncovers Missing Gene Expression and Spatial-induced Information for Spatial Transcriptomic Data Analysis;2024-08-27

5. Dissecting heterogeneity of tumor microenvironment in colorectal cancer using high-resolution single-cell atlas;2024-08-26