Applications of Molecular Simulation in the Discovery of Antituberculosis Drugs: A Review

Author:

Hu Jian-Ping1ORCID,Wu Zhi-Xiang1ORCID,Xie Tao1ORCID,Liu Xin-Yu2ORCID,Yan Xiao1ORCID,Sun Xin1ORCID,Liu Wei1ORCID,Liang Li1ORCID,He Gang1ORCID,Gan Ya1ORCID,Gou Xiao-Jun1ORCID,Shi Zheng1ORCID,Zou Qiang1,Wan Hua3ORCID,Shi Hu-Bing2ORCID,Chang Shan4ORCID

Affiliation:

1. College of Pharmacy and Biological Engineering, Sichuan Industrial Institute of Antibiotics, Key Laboratory of Medicinal and Edible Plants Resources Development of Sichuan Education Department, Chengdu University, Chengdu, China

2. Laboratory of Tumor Targeted and Immune Therapy, Clinical Research Center for Breast, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University and Collaborative Innovation Center, Chengdu, China

3. College of Mathematics and Informatics, South China Agricultural University, Guangzhou, China

4. Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou, China

Abstract

:After decades of efforts, tuberculosis has been well controlled in most places. The existing drugs are no longer sufficient for the treatment of drug-resistant Mycobacterium tuberculosis due to significant toxicity and selective pressure, especially for XDR-TB. In order to accelerate the development of high-efficiency, low-toxic antituberculosis drugs, it is particularly important to use Computer Aided Drug Design (CADD) for rational drug design. Here, we systematically reviewed the specific role of molecular simulation in the discovery of new antituberculosis drugs.:The purpose of this review is to overview current applications of molecular simulation methods in the discovery of antituberculosis drugs. Furthermore, the unique advantages of molecular simulation was discussed in revealing the mechanism of drug resistance.:The comprehensive use of different molecular simulation methods will help reveal the mechanism of drug resistance and improve the efficiency of rational drug design.:With the help of molecular simulation methods such as QM/MM method, the mechanisms of biochemical reactions catalyzed by enzymes at atomic level in Mycobacterium tuberculosis has been deeply analyzed. QSAR and virtual screening both accelerate the development of highefficiency, low-toxic potential antituberculosis drugs. Improving the accuracy of existing algorithms and developing more efficient new methods for CADD will always be a hot topic in the future. It is of great value to utilize molecular dynamics simulation to investigate complex systems that cannot be studied in experiments, especially for drug resistance of Mycobacterium tuberculosis.

Funder

Project of Sichuan Traditional Chinese Medicine Administration

Key Project of Sichuan Provincial Education Bureau

Key Program of the Science and Technology Bureau of Sichuan

Project of Chengdu Science and Technology bureau

Joint International Cooperation grant from the Science and Technology department of Sichuan Province

National Natural Science Foundation of China

National Key Research and Development Program of China

Publisher

Bentham Science Publishers Ltd.

Subject

Biochemistry,General Medicine,Structural Biology

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