Cancer Prognosis and Diagnosis Methods Based on Ensemble Learning

Author:

Zolfaghari Behrouz1ORCID,Mirsadeghi Leila2ORCID,Bibak Khodakhast3ORCID,Kavousi Kaveh2ORCID

Affiliation:

1. Department of Mathematics, Faculty of Education and Integrated Arts and Sciences, Waseda University, Eyüpsultan, Istanbul, Turkey, Japan

2. Laboratory of Complex Biological Systems and Bioinformatics (CBB), Department of Bioinformatics, Institute of Biochemistry and Biophysics (IBB), University of Tehran, Tehran, Iran

3. Department of Computer Science and Software Engineering, Miami University, Oxford, OH, USA

Abstract

Ensemble methods try to improve performance via integrating different kinds of input data, features, or learning algorithms. In addition to other areas, they are finding their applications in cancer prognosis and diagnosis. However, in this area, the research community is lagging behind the technology. A systematic review along with a taxonomy on ensemble methods used in cancer prognosis and diagnosis can pave the way for the research community to keep pace with the technology and even lead trend. In this article, we first present an overview on existing relevant surveys and highlight their shortcomings, which raise the need for a new survey focusing on Ensemble Classifiers (ECs) used for the diagnosis and prognosis of different cancer types. Then, we exhaustively review the existing methods, including the traditional ones as well as those based on deep learning. The review leads to a taxonomy as well as the identification of the best-studied cancer types, the best ensemble methods used for the related purposes, the prevailing input data types, the most common decision-making strategies, and the common evaluating methodologies. Moreover, we establish future directions for researchers interested in following existing research trends or working on less-studied aspects of the area.

Funder

Biotechnology Development Council of the Islamic Republic of Iran

Publisher

Association for Computing Machinery (ACM)

Subject

General Computer Science,Theoretical Computer Science

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