A System For Motif Search In Biological Networks

Author:

da Silva Freire Alexandre1,Lima Karla R. P. S.1,Rojas Diego Ignacio Zurita1

Affiliation:

1. Escola de Artes, Ciências e Humanidades, Universidade de São Paulo, São Paulo, SP

Funder

Conselho Nacional de Desenvolvimento Cientifico e Tecnologico

Publisher

ACM Press

Reference19 articles.

1. Nadja Betzler, Michael R. Fellows, Christian Komusiewicz, and Rolf Niedermeier. 2008. Parameterized Algorithms and Hardness Results for Some Graph Motif Problems. In Combinatorial Pattern Matching, Paolo Ferragina and Gad M. Landau (Eds.). Springer Berlin Heidelberg, Berlin, Heidelberg, 31--43.

2. J.A. Bondy and U.S.R. Murty. 2008. Graph Theory. Springer.

3. Felipe Brigatto and Karla R. Lima. 2015. Desenvolvimento de uma Formulação Linear Inteira para o Problema de Motifs em Grafos. In II Workshop de Iniciação Científica em Sistemas de Informação -- XI Simpósio Brasileiro de Sistemas de Informação. 29--32.

4. Manoel Campêlo, Victor A. Campos, and Ricardo C. Corrêa. 2008. On the asymmetric representatives formulation for the vertex coloring problem. Discrete Applied Mathematics 156, 7 (2008), 1097--1111. https://doi.org/10.1016/j.dam.2007.05.058GRACO 2005.

5. Manoel Campêlo, Alexandre S. Freire, Karla R. Lima, Phablo F. S. Moura, and Yoshiko Wakabayashi. 2016. The convex recoloring problem: polyhedra, facets and computational experiments. Mathematical Programming 156, 1 (2016), 303--330.

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