Fast and memory-efficient scRNA-seq k -means clustering with various distances

Author:

Baker Daniel N.1,Dyjack Nathan2,Braverman Vladimir1,Hicks Stephanie C.2,Langmead Ben1

Affiliation:

1. Johns Hopkins University

2. Johns Hopkins University, Bloomberg

Funder

NIH (National Institutes of Health)

Chan Zuckerberg Initiative

Publisher

ACM

Reference39 articles.

1. Daniel Baker. 2008. libsimdsampling. http://github.com/dnbaker/libsimdsampling. [Online; accessed 7 Feb 2021]. Daniel Baker. 2008. libsimdsampling. http://github.com/dnbaker/libsimdsampling. [Online; accessed 7 Feb 2021].

2. Distributed k-means and k-median Clustering on General Topologies;Balcan Maria-Florina F;Advances in Neural Information Processing Systems,2013

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1. Deep Multi-Constraint Soft Clustering Analysis for Single-Cell RNA-Seq Data via Zero-Inflated Autoencoder Embedding;IEEE/ACM Transactions on Computational Biology and Bioinformatics;2023-05-01

2. A scalable and unbiased discordance metric with H+;Biostatistics;2022-09-05

3. Deep Spectral Clustering of Single-Cell RNA-seq Data;2022 International Congress on Human-Computer Interaction, Optimization and Robotic Applications (HORA);2022-06-09

4. A scalable and unbiased discordance metric with H+;2022-02-05

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