BioFast

Author:

Bleiholder Jens1,Naumann Felix1,Lacroix Zoé2,Raschid Louiqa3,Murthy Hyma3,Vidal Maria-Esther4

Affiliation:

1. Humboldt-Universität zu Berlin

2. Arizona State University

3. University of Maryland

4. Universidad Simon Bolivar

Abstract

An abundance of life sciences data sources contain data about scientific entities such as genes and sequences. Scientists are interested in exploring relationships between scientific objects, e.g., between genes and bibliographic citations. A scientist may choose the OMIM source, which contains information related to human genetic diseases, as a starting point for her exploration, and wish to eventually retrieve all related citations from the PUBMED source. Starting with a keyword search on a certain disease, she can explore all possible relationships between genes in OMIM and citations in PUBMED. This corresponds to the following query: "Return all citations of PUBMED that are linked to an OMIM entry that is related to some disease or condition."

Publisher

Association for Computing Machinery (ACM)

Subject

Information Systems,Software

Reference6 articles.

1. B. Eckman A. Kosky and L. Laroco. Extending traditional query-based integration approaches for functional characterization of post-genomic data. BioInformatics 17(2) 2000. B. Eckman A. Kosky and L. Laroco. Extending traditional query-based integration approaches for functional characterization of post-genomic data. BioInformatics 17(2) 2000.

2. An adaptive query execution system for data integration

3. Z. Lacroix H. Murthy F. Naumann and L. Raschid. Characterizing properties of paths in biological data sources. To appear in the Proceedings of the DILS Conference 2004. Z. Lacroix H. Murthy F. Naumann and L. Raschid. Characterizing properties of paths in biological data sources. To appear in the Proceedings of the DILS Conference 2004.

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