Automatic Reproduction of Workflows in the Snakemake Workflow Catalog and nf-core Registries-Reference-Cited by-同舟云学术

Automatic Reproduction of Workflows in the Snakemake Workflow Catalog and nf-core Registries

Published:2023-06-27 Issue: Volume: Page:
ISSN:
Container-title:Proceedings of the 2023 ACM Conference on Reproducibility and Replicability
language:
Short-container-title:

Author:

Grayson Samuel¹^ORCID,Marinov Darko¹^ORCID,Katz Daniel S.²^ORCID,Milewicz Reed³^ORCID

Affiliation:

1. Department of Computer Science, University of Illinois at Urbana-Champaign, USA

2. NCSA & CS & ECE & iSchool, University of Illinois at Urbana-Champaign, USA

3. Department of Software Engineering and Research, Sandia National Laboratories, USA

Funder

NSF (National Science Foundation)

Publisher

ACM

Link

https://dl.acm.org/doi/pdf/10.1145/3589806.3600037

Reference44 articles.

1. J. Annan , D. Hargreaves , D. Lunt , A. Ridgwell , I. Rutt , and R. Sander . 2013 . Editorial: The publication of geoscientific model developments v1.0. Geoscientific Model Development 6, 4 (Aug. 2013), 1233–1242. https://doi.org/10.5194/gmd-6-1233-2013 Publisher : Copernicus GmbH. 10.5194/gmd-6-1233-2013 J. Annan, D. Hargreaves, D. Lunt, A. Ridgwell, I. Rutt, and R. Sander. 2013. Editorial: The publication of geoscientific model developments v1.0. Geoscientific Model Development 6, 4 (Aug. 2013), 1233–1242. https://doi.org/10.5194/gmd-6-1233-2013 Publisher: Copernicus GmbH.

2. STIG Authors. 2020. Red Hat Enterprise Linux 8 Security Technical Implementation Guide. https://www.stigviewer.com/stig/red_hat_enterprise_linux_8/2020-11-25/ STIG Authors. 2020. Red Hat Enterprise Linux 8 Security Technical Implementation Guide. https://www.stigviewer.com/stig/red_hat_enterprise_linux_8/2020-11-25/

3. Parsl

4. Brett K. Beaulieu-Jones and Casey S. Greene . 2017. Reproducibility of computational workflows is automated using continuous analysis. Nature Biotechnology 35, 4 (April 2017 ), 342–346. https://doi.org/10.1038/nbt.3780 Number : 4 Publisher : Nature Publishing Group . 10.1038/nbt.3780 Brett K. Beaulieu-Jones and Casey S. Greene. 2017. Reproducibility of computational workflows is automated using continuous analysis. Nature Biotechnology 35, 4 (April 2017), 342–346. https://doi.org/10.1038/nbt.3780 Number: 4 Publisher: Nature Publishing Group.

5. Anila Sahar Butt and Peter Fitch . 2020. ProvONE+ : A Provenance Model for Scientific Workflows . In Web Information Systems Engineering – WISE 2020(Lecture Notes in Computer Science) , Zhisheng Huang, Wouter Beek, Hua Wang, Rui Zhou, and Yanchun Zhang (Eds.). Springer International Publishing , Cham , 431–444. https://doi.org/10.1007/978-3-030-6 2008 -0_30 10.1007/978-3-030-62008-0_30 Anila Sahar Butt and Peter Fitch. 2020. ProvONE+: A Provenance Model for Scientific Workflows. In Web Information Systems Engineering – WISE 2020(Lecture Notes in Computer Science), Zhisheng Huang, Wouter Beek, Hua Wang, Rui Zhou, and Yanchun Zhang (Eds.). Springer International Publishing, Cham, 431–444. https://doi.org/10.1007/978-3-030-62008-0_30