CASA: An Energy-Efficient and High-Speed CAM-based SMEM Seeding Accelerator for Genome Alignment-Reference-Cited by-同舟云学术

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CASA: An Energy-Efficient and High-Speed CAM-based SMEM Seeding Accelerator for Genome Alignment

Published:2023-10-28 Issue: Volume: Page:
ISSN:
Container-title:56th Annual IEEE/ACM International Symposium on Microarchitecture
language:
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Author:

Huang Yi¹^ORCID,Kong Lingkun²^ORCID,Chen Dibei¹^ORCID,Chen Zhiyu³^ORCID,Kong Xiangyu¹^ORCID,Zhu Jianfeng¹^ORCID,Mamouras Konstantinos²^ORCID,Wei Shaojun¹^ORCID,Yang Kaiyuan²^ORCID,Liu Leibo¹^ORCID

Affiliation:

1. School of Integrated Circuits, Beijing National Research Center for Information Science and Technology (BNRist), Tsinghua University, China

2. Rice University, United States of America

3. Rice University, USA

Funder

National Natural Science Foundation of China

Beijing Superstring Academy of Memory Technology

Publisher

ACM

Link

https://dl.acm.org/doi/pdf/10.1145/3613424.3614313

Reference72 articles.

1. PIM-Assembler: A Processing-in-Memory Platform for Genome Assembly

2. A fast string searching algorithm

3. [ 5 ] BWA-MEM2 ERT 2022 . https://github.com/bwa-mem2/bwa-mem2/tree/ert. [5] BWA-MEM2 ERT 2022. https://github.com/bwa-mem2/bwa-mem2/tree/ert.

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