Salmon-Easy: An alignment-free RNA-seq quantitative strategy based on partial genome indexing
Author:
Affiliation:
1. College of Life Sciences and Health, Wuhan University of Science and Technology, China
Funder
the National Natural Science Foundation of China
Publisher
ACM
Link
https://dl.acm.org/doi/pdf/10.1145/3543377.3543386
Reference20 articles.
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2. THIND A MONGA I THAKUR P 2021. Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology [J]. Briefings in bioinformatics. 22(6). THIND A MONGA I THAKUR P 2021. Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology [J]. Briefings in bioinformatics. 22(6).
3. LI H HANDSAKER B WYSOKER A 2009. The Sequence Alignment/Map format and SAMtools [J]. Bioinformatics (Oxford England). 25(16): 2078-9. LI H HANDSAKER B WYSOKER A 2009. The Sequence Alignment/Map format and SAMtools [J]. Bioinformatics (Oxford England). 25(16): 2078-9.
4. LEE C MARAGKAKIS M. 2021. SamQL: a structured query language and filtering tool for the SAM/BAM file format [J]. BMC bioinformatics.22(1): 474. LEE C MARAGKAKIS M. 2021. SamQL: a structured query language and filtering tool for the SAM/BAM file format [J]. BMC bioinformatics.22(1): 474.
5. YU X LIU X. 2020 Mapping RNA-seq reads to transcriptomes efficiently based on learning to hash method [J]. Computers in biology and medicine. 116: 103539. YU X LIU X. 2020 Mapping RNA-seq reads to transcriptomes efficiently based on learning to hash method [J]. Computers in biology and medicine. 116: 103539.
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