Quill: A Memory Efficient k-mer Counting and k-mer Querying Tool for Commodity Clusters-Reference-Cited by-同舟云学术

Quill: A Memory Efficient k-mer Counting and k-mer Querying Tool for Commodity Clusters

Published:2022-05-27 Issue: Volume: Page:
ISSN:
Container-title:2022 14th International Conference on Bioinformatics and Biomedical Technology
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Author:

Edippuliarachchi Budvin¹,Gamlath Damika¹,Amaratunga Ruchin¹,Brihadiswaran Gunavaran¹,Jayasena Sanath¹

Affiliation:

1. Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka

Publisher

ACM

Link

https://dl.acm.org/doi/pdf/10.1145/3543377.3543389

Reference18 articles.

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2. 2020. Google Sparsehash. Retrieved April 2022 from https://github.com/sparsehash/sparsehash 2020. Google Sparsehash. Retrieved April 2022 from https://github.com/sparsehash/sparsehash

3. Frigate: a fast, in-memory tool for counting and querying k-mers

4. Sebastian Deorowicz , Agnieszka Debudaj-Grabysz , and Szymon Grabowski . 2013. Disk-based k-mer counting on a PC. BMC bioinformatics 14 (05 2013 ), 160. https://doi.org/10.1186/1471-2105-14-160 Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, and Szymon Grabowski. 2013. Disk-based k-mer counting on a PC. BMC bioinformatics 14 (05 2013), 160. https://doi.org/10.1186/1471-2105-14-160

5. Sebastian Deorowicz , Marek Kokot , Szymon Grabowski , and Agnieszka Debudaj-Grabysz . 2015. KMC 2: fast and resource-frugal k-mer counting. Bioinformatics 31, 10 (01 2015 ), 1569–1576. https://doi.org/10.1093/bioinformatics/btv022 arXiv:https://academic.oup.com/bioinformatics/article-pdf/31/10/1569/17085507/btv022.pdf Sebastian Deorowicz, Marek Kokot, Szymon Grabowski, and Agnieszka Debudaj-Grabysz. 2015. KMC 2: fast and resource-frugal k-mer counting. Bioinformatics 31, 10 (01 2015), 1569–1576. https://doi.org/10.1093/bioinformatics/btv022 arXiv:https://academic.oup.com/bioinformatics/article-pdf/31/10/1569/17085507/btv022.pdf