Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly-Reference-Cited by-同舟云学术

Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly

Published:2022-08-29 Issue: Volume: Page:
ISSN:
Container-title:Proceedings of the 51st International Conference on Parallel Processing
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Author:

Guidi Giulia¹,Raulet Gabriel²,Rokhsar Daniel³,Oliker Leonid⁴,Yelick Katherine⁵,Buluç Aydin⁵

Affiliation:

1. University of California, Berkeley, United States and Lawrence Berkeley National Laboratory, United States

2. Lawrence Berkeley National Laboratory, United States

3. University of California, Berkeley, United States and DOE Joint Genome Institute, United States of America

4. Lawrence Berkeley National Laboratory, United States of America

5. University of California, Berkeley, United States of America and Lawrence Berkeley National Laboratory, United States of America

Funder

Office of Science of the DOE

Publisher

ACM

Link

https://dl.acm.org/doi/pdf/10.1145/3545008.3545050

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3. Ariful Azad and Aydın Buluç . 2019 . LACC: A Linear-Algebraic Algorithm for Finding Connected Components in Distributed Memory. In IEEE International Parallel and Distributed Processing Symposium (IPDPS). ACM New York, NY, USA. Ariful Azad and Aydın Buluç. 2019. LACC: A Linear-Algebraic Algorithm for Finding Connected Components in Distributed Memory. In IEEE International Parallel and Distributed Processing Symposium (IPDPS). ACM New York, NY, USA.

4. Combinatorial BLAS 2.0: Scaling Combinatorial Algorithms on Distributed-Memory Systems

5. UPC++: A High-Performance Communication Framework for Asynchronous Computation

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