AcrTransAct: Pre-trained Protein Transformer Models for the Detection of Type I Anti-CRISPR Activities-Reference-Cited by-同舟云学术

AcrTransAct: Pre-trained Protein Transformer Models for the Detection of Type I Anti-CRISPR Activities

Published:2023-09-03 Issue: Volume: Page:
ISSN:
Container-title:Proceedings of the 14th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics
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Author:

Hasani Moein¹^ORCID,N. Trost Chantel²^ORCID,Timmerman Nolen¹^ORCID,Jin Lingling¹^ORCID

Affiliation:

1. Computer Science, University of Saskatchewan, Saskatoon, Saskatchewan, Canada

2. Molecular Genetics, University of Toronto, Toronto, Ontario, Canada

Funder

Natural Sciences and Engineering Research Council of Canada

Publisher

ACM

Link

https://dl.acm.org/doi/pdf/10.1145/3584371.3613007

Reference31 articles.

1. UniProt: the universal protein knowledgebase

2. Joe Bondy-Denomy , April Pawluk , Karen L Maxwell , and Alan R Davidson . 2013. Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature 493, 7432 ( 2013 ), 429--432. Joe Bondy-Denomy, April Pawluk, Karen L Maxwell, and Alan R Davidson. 2013. Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature 493, 7432 (2013), 429--432.

3. Stan JJ Brouns , Matthijs M Jore , Magnus Lundgren , Edze R Westra , Rik JH Slijkhuis , Ambrosius PL Snijders, Mark J Dickman, Kira S Makarova, Eugene V Koonin, and John Van Der Oost. 2008 . Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321, 5891 (2008), 960--964. Stan JJ Brouns, Matthijs M Jore, Magnus Lundgren, Edze R Westra, Rik JH Slijkhuis, Ambrosius PL Snijders, Mark J Dickman, Kira S Makarova, Eugene V Koonin, and John Van Der Oost. 2008. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321, 5891 (2008), 960--964.

4. Structure reveals mechanisms of viral suppressors that intercept a CRISPR RNA-guided surveillance complex;Chowdhury Saikat;Cell,2017

5. Anti-CRISPRdb: a comprehensive online resource for anti-CRISPR proteins;Dong Chuan;Nucleic Acids Research,2018