Large-scale Dataset and Effective Model for Variant-Disease Associations Extraction

Author:

Chen Lei1ORCID,Su Junhao1ORCID,Zheng Zhenxian1ORCID,Lam Tak-Wah1ORCID,Luo Ruibang1ORCID

Affiliation:

1. Department of Computer Science, The University of Hong Kong, Hong Kong, Hong Kong

Funder

Hong Kong Research Grants Council grants GRF

Hong Kong Research Grants Council grants TRS

The Shenzhen Municipal Government General Program

Publisher

ACM

Reference21 articles.

1. Jennifer Asimit and Eleftheria Zeggini . 2010. Rare variant association analysis methods for complex traits. Annual review of genetics 44 ( 2010 ), 293--308. Jennifer Asimit and Eleftheria Zeggini. 2010. Rare variant association analysis methods for complex traits. Annual review of genetics 44 (2010), 293--308.

2. Iz Beltagy , Kyle Lo , and Arman Cohan . 2019. SciBERT: A pretrained language model for scientific text. arXiv preprint arXiv:1903.10676 ( 2019 ). Iz Beltagy, Kyle Lo, and Arman Cohan. 2019. SciBERT: A pretrained language model for scientific text. arXiv preprint arXiv:1903.10676 (2019).

3. Àlex Bravo , Janet Piñero , Núria Queralt-Rosinach , Michael Rautschka , and Laura I Furlong . 2015. Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research. BMC bioinformatics 16 ( 2015 ), 1--17. Àlex Bravo, Janet Piñero, Núria Queralt-Rosinach, Michael Rautschka, and Laura I Furlong. 2015. Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research. BMC bioinformatics 16 (2015), 1--17.

4. Jacob Devlin , Ming-Wei Chang , Kenton Lee , and Kristina Toutanova . 2018 . Bert: Pre-training of deep bidirectional transformers for language understanding. arXiv preprint arXiv:1810.04805 (2018). Jacob Devlin, Ming-Wei Chang, Kenton Lee, and Kristina Toutanova. 2018. Bert: Pre-training of deep bidirectional transformers for language understanding. arXiv preprint arXiv:1810.04805 (2018).

5. Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature

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