Localized, Non-parametric Detection of RNA Structural Modification using Nanopore Basecalling.-Reference-Cited by-同舟云学术

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Localized, Non-parametric Detection of RNA Structural Modification using Nanopore Basecalling.

Published:2023-09-03 Issue: Volume: Page:
ISSN:
Container-title:Proceedings of the 14th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics
language:
Short-container-title:

Author:

White Bear J.¹^ORCID,De Bisschop Grégoire²^ORCID,Lécuyer Éric²^ORCID,Waldispühl Jérôme¹^ORCID

Affiliation:

1. Computer Science, McGill University, Montreal, Quebec, Canada

2. Institut de recherches cliniques de Montréal (IRCM), Montreal, Quebec, Canada

Funder

Fonds de Recherche du Québec - Santé (FRQS)

Publisher

ACM

Link

https://dl.acm.org/doi/pdf/10.1145/3584371.3612989

Reference27 articles.

1. [n. d.]. scipy.signal.find_peaks --- SciPy v1.11.1 Manual. https://docs.scipy.org/doc/scipy/reference/generated/scipy.signal.find_peaks.html [n. d.]. scipy.signal.find_peaks --- SciPy v1.11.1 Manual. https://docs.scipy.org/doc/scipy/reference/generated/scipy.signal.find_peaks.html

2. [n. d.]. scipy.stats.gaussian_kde --- SciPy v1.11.1 Manual. https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.gaussian_kde.html [n. d.]. scipy.stats.gaussian_kde --- SciPy v1.11.1 Manual. https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.gaussian_kde.html

3. 2023. Pysam. https://github.com/pysam-developers/pysam original-date: 2014-02-05T20:38:10Z. 2023. Pysam. https://github.com/pysam-developers/pysam original-date: 2014-02-05T20:38:10Z.

4. DRUMMER—rapid detection of RNA modifications through comparative nanopore sequencing

5. Determination of isoform-specific RNA structure with nanopore long reads

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