CodonBERT: Using BERT for Sentiment Analysis to Better Predict Genes with Low Expression-Reference-Cited by-同舟云学术

CodonBERT: Using BERT for Sentiment Analysis to Better Predict Genes with Low Expression

Published:2023-09-03 Issue: Volume: Page:
ISSN:
Container-title:Proceedings of the 14th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics
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Author:

Babjac Ashley Nicole¹^ORCID,Lu Zhixiu¹^ORCID,Emrich Scott J¹^ORCID

Affiliation:

1. Department of Computer Science, University of Tennessee, Knoxville, Tennessee, USA

Publisher

ACM

Link

https://dl.acm.org/doi/pdf/10.1145/3584371.3613013

Reference31 articles.

1. Ashley Babjac , Jun Li , and Scott Emrich . 2021 . Fine-Grained Synonymous Codon Usage Patterns and their Potential Role in Functional Protein Production . In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2187--2193 . Ashley Babjac, Jun Li, and Scott Emrich. 2021. Fine-Grained Synonymous Codon Usage Patterns and their Potential Role in Functional Protein Production. In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2187--2193.

2. J.L. Chaney A. Steele R. Carmichael A. Rodriguez A.T. Specht K. Ngo J. Li S. Emrich and P.L. Clark. 2017. Widespread position-specific conservation of synonymous rare codons within coding sequences. PLOS Computational Biology 13 5 (05 2017) 1--19. J.L. Chaney A. Steele R. Carmichael A. Rodriguez A.T. Specht K. Ngo J. Li S. Emrich and P.L. Clark. 2017. Widespread position-specific conservation of synonymous rare codons within coding sequences. PLOS Computational Biology 13 5 (05 2017) 1--19.

3. Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events

4. KR1442 Chowdhary. 2020. Natural language processing. Fundamentals of artificial intelligence ( 2020 ), 603--649. KR1442 Chowdhary. 2020. Natural language processing. Fundamentals of artificial intelligence (2020), 603--649.