SeqScreen-Nano: a computational platform for streaming, in-field characterization of microbial pathogens

Author:

Balaji Advait1ORCID,Liu Yunxi1ORCID,Nute Michael G.1ORCID,Hu Bingbing1ORCID,D. Kappell Anthony2ORCID,S. Lesassier Danielle2ORCID,D. Godbold Gene3ORCID,Ternus Krista2ORCID,Treangen Todd1ORCID

Affiliation:

1. Department of Computer Science, Rice University, Houston, Texas, USA

2. Signature Science LLC, Austin, Texas, USA

3. Signature Science LLC, Charlottesville, Virginia, USA

Funder

Intelligence Advanced Research Projects Activity

NIH (National Institutes of Health)

NSF (National Science Foundation)

Publisher

ACM

Reference49 articles.

1. Benjamin Albrecht , Caner Bağcı , and Daniel H Huson . 2020. MAIRA-real-time taxonomic and functional analysis of long reads on a laptop. BMC bioinformatics 21, 13 ( 2020 ), 1--12. Benjamin Albrecht, Caner Bağcı, and Daniel H Huson. 2020. MAIRA-real-time taxonomic and functional analysis of long reads on a laptop. BMC bioinformatics 21, 13 (2020), 1--12.

2. Brian P Alcock , Amogelang R Raphenya , Tammy TY Lau , Kara K Tsang , Mégane Bouchard , Arman Edalatmand , William Huynh , Anna-Lisa V Nguyen , Annie A Cheng , Sihan Liu , 2020 . CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. Nucleic acids research 48 , D1 (2020), D517--D525. Brian P Alcock, Amogelang R Raphenya, Tammy TY Lau, Kara K Tsang, Mégane Bouchard, Arman Edalatmand, William Huynh, Anna-Lisa V Nguyen, Annie A Cheng, Sihan Liu, et al. 2020. CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. Nucleic acids research 48, D1 (2020), D517--D525.

3. Shanika L Amarasinghe , Shian Su , Xueyi Dong , Luke Zappia , Matthew E Ritchie , and Quentin Gouil . 2020. Opportunities and challenges in long-read sequencing data analysis. Genome biology 21, 1 ( 2020 ), 1--16. Shanika L Amarasinghe, Shian Su, Xueyi Dong, Luke Zappia, Matthew E Ritchie, and Quentin Gouil. 2020. Opportunities and challenges in long-read sequencing data analysis. Genome biology 21, 1 (2020), 1--16.

4. Kin Fai Au. 2022. The blooming of long-read sequencing reforms biomedical research. 4 pages. Kin Fai Au. 2022. The blooming of long-read sequencing reforms biomedical research. 4 pages.

5. SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning;Balaji Advait;Genome Biology,2022

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