Generalized Matching Distance: Tumor Phylogeny Comparison Beyond the Infinite Sites Assumption

Author:

Nguyen Quoc1ORCID,Oesper Layla1ORCID

Affiliation:

1. Carleton College, Northfield, MN, USA

Funder

NSF (National Science Foundation)

Publisher

ACM

Reference28 articles.

1. Avesh Kumar Agrawal and Hamim Zafar. 2022. FiMO: Inferring the Temporal Order of Mutations on Clonal Phylogeny under Finite-sites Models. bioRxiv (2022) 2022--01. Avesh Kumar Agrawal and Hamim Zafar. 2022. FiMO: Inferring the Temporal Order of Mutations on Clonal Phylogeny under Finite-sites Models. bioRxiv (2022) 2022--01.

2. Nabil Amirouchene-Angelozzi , Charles Swanton , and Alberto Bardelli . 2017. Tumor Evolution as a Therapeutic TargetThe Impact of Tumor Evolution in Precision Medicine. Cancer discovery 7, 8 ( 2017 ), 805--817. Nabil Amirouchene-Angelozzi, Charles Swanton, and Alberto Bardelli. 2017. Tumor Evolution as a Therapeutic TargetThe Impact of Tumor Evolution in Precision Medicine. Cancer discovery 7, 8 (2017), 805--817.

3. Niko Beerenwinkel , Roland F Schwarz , Moritz Gerstung , and Florian Markowetz . 2015. Cancer evolution: mathematical models and computational inference. Systematic biology 64, 1 ( 2015 ), e1--e25. Niko Beerenwinkel, Roland F Schwarz, Moritz Gerstung, and Florian Markowetz. 2015. Cancer evolution: mathematical models and computational inference. Systematic biology 64, 1 (2015), e1--e25.

4. Joseph H Camin and Robert R Sokal . 1965. A method for deducing branching sequences in phylogeny. Evolution ( 1965 ), 311--326. Joseph H Camin and Robert R Sokal. 1965. A method for deducing branching sequences in phylogeny. Evolution (1965), 311--326.

5. Triplet-based similarity score for fully multilabeled trees with poly-occurring labels;Ciccolella Simone;Bioinformatics,2021

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