Deep learning-based survival prediction using DNA methylation-derived 3D genomic information

Author:

Yang Jeewon1ORCID,Lee Dohoon23ORCID,Koo Bonil45ORCID,Jeong Dabin4ORCID,Kim Sun65ORCID

Affiliation:

1. Interdisciplinary Program in Artificial Intelligence, Seoul National University, Seoul, Republic of Korea

2. BK21 FOUR Intelligence Computing, Seoul National University, Seoul National University, Seoul, Republic of Korea

3. Bioinformatics Institute, Seoul National University, Seoul National University, Seoul, Republic of Korea

4. Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea

5. AIGENDRUG Co., Ltd., Seoul, Republic of Korea

6. Department of Computer Science and Engineering, Seoul National University, Seoul, Republic of Korea

Funder

Institute of Information and Communications Technology Planning & Evaluation

National Research Foundation of Korea

Publisher

ACM

Reference61 articles.

1. 2021. The Gene Ontology resource: enriching a GOld mine. Nucleic acids research 49 , D1 ( 2021 ), D325--D334. 2021. The Gene Ontology resource: enriching a GOld mine. Nucleic acids research 49, D1 (2021), D325--D334.

2. Cooler: scalable storage for Hi-C data and other genomically labeled arrays

3. Retinoic acid signaling in cancer: the parable of acute promyelocytic leukemia;Ablain Julien;International Journal of Cancer,2014

4. Michael Ashburner Catherine A Ball Judith A Blake David Botstein Heather Butler J Michael Cherry Allan P Davis Kara Dolinski Selina S Dwight Janan T Eppig etal 2000. Gene ontology: tool for the unification of biology. Nature genetics 25 1 (2000) 25--29. Michael Ashburner Catherine A Ball Judith A Blake David Botstein Heather Butler J Michael Cherry Allan P Davis Kara Dolinski Selina S Dwight Janan T Eppig et al. 2000. Gene ontology: tool for the unification of biology. Nature genetics 25 1 (2000) 25--29.

5. Haruhito Azuma Teruo Inamoto Takeshi Sakamoto Satoshi Kiyama Takanobu Ubai Yuko Shinohara Kentaro Maemura Motomu Tsuji Naoki Segawa Hiroshi Masuda etal 2003. γ-Aminobutyric acid as a promoting factor of cancer metastasis; induction of matrix metalloproteinase production is potentially its underlying mechanism. Cancer research 63 23 (2003) 8090--8096. Haruhito Azuma Teruo Inamoto Takeshi Sakamoto Satoshi Kiyama Takanobu Ubai Yuko Shinohara Kentaro Maemura Motomu Tsuji Naoki Segawa Hiroshi Masuda et al. 2003. γ -Aminobutyric acid as a promoting factor of cancer metastasis; induction of matrix metalloproteinase production is potentially its underlying mechanism. Cancer research 63 23 (2003) 8090--8096.

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