Graph-in-Graph Network for Automatic Gene Ontology Description Generation

Author:

Liu Fenglin1,Yang Bang1,You Chenyu2,Wu Xian3,Ge Shen3,Woicik Adelaide4,Wang Sheng4

Affiliation:

1. Peking University, Shenzhen, China

2. Yale University, New Haven, CT, USA

3. Tencent, Beijing, China

4. University of Washington, Seattle, WA, USA

Publisher

ACM

Reference46 articles.

1. Michael Ashburner , Catherine A Ball , Judith A Blake , David Botstein , Heather Butler , J Michael Cherry , Allan P Davis , Kara Dolinski , Selina S Dwight , Janan T Eppig , 2000 . Gene Ontology: Tool for the Unification of Biology. Nature genetics 25, 1 (2000), 25--29. https://doi.org/10.1038/75556 Michael Ashburner, Catherine A Ball, Judith A Blake, David Botstein, Heather Butler, J Michael Cherry, Allan P Davis, Kara Dolinski, Selina S Dwight, Janan T Eppig, et al. 2000. Gene Ontology: Tool for the Unification of Biology. Nature genetics 25, 1 (2000), 25--29. https://doi.org/10.1038/75556

2. Lei Jimmy Ba , Jamie Ryan Kiros, and Geoffrey E. Hinton . 2016 . Layer Normalization. CoRR abs/1607.06450 (2016). arXiv:1607.06450 http://arxiv.org/abs/1607.06450 Lei Jimmy Ba, Jamie Ryan Kiros, and Geoffrey E. Hinton. 2016. Layer Normalization. CoRR abs/1607.06450 (2016). arXiv:1607.06450 http://arxiv.org/abs/1607.06450

3. Dzmitry Bahdanau , Kyunghyun Cho , and Yoshua Bengio . 2015 . Neural Machine Translation by Jointly Learning to Align and Translate . In 3rd International Conference on Learning Representations, ICLR 2015. ICLR, San Diego, CA, USA. http://arxiv.org/abs/1409.0473 Dzmitry Bahdanau, Kyunghyun Cho, and Yoshua Bengio. 2015. Neural Machine Translation by Jointly Learning to Align and Translate. In 3rd International Conference on Learning Representations, ICLR 2015. ICLR, San Diego, CA, USA. http://arxiv.org/abs/1409.0473

4. Satanjeev Banerjee and Alon Lavie . 2005 . METEOR: An Automatic Metric for MT Evaluation with Improved Correlation with Human Judgments . In Proceedings of the Workshop on Intrinsic and Extrinsic Evaluation Measures for Machine Translation and/or Summarization@ACL 2005. Association for Computational Linguistics, Ann Arbor, Michigan, USA, 65--72. https://aclanthology.org/W05-0909/ Satanjeev Banerjee and Alon Lavie. 2005. METEOR: An Automatic Metric for MT Evaluation with Improved Correlation with Human Judgments. In Proceedings of the Workshop on Intrinsic and Extrinsic Evaluation Measures for Machine Translation and/or Summarization@ACL 2005. Association for Computational Linguistics, Ann Arbor, Michigan, USA, 65--72. https://aclanthology.org/W05-0909/

5. Graph Transformer for Graph-to-Sequence Learning

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