Graph Neural Networks for Multimodal Single-Cell Data Integration

Author:

Wen Hongzhi1,Ding Jiayuan1,Jin Wei1,Wang Yiqi1,Xie Yuying1,Tang Jiliang1

Affiliation:

1. Michigan State University, East Lansing, MI, USA

Funder

National Science Foundation

Army Research Office

Publisher

ACM

Reference36 articles.

1. Ricard Argelaguet , Damien Arnol , Danila Bredikhin , Yonatan Deloro , Britta Velten , John C Marioni , and Oliver Stegle . 2020. MOFA+ : a statistical framework for comprehensive integration of multi-modal single-cell data. Genome biology 21, 1 ( 2020 ), 1--17. Ricard Argelaguet, Damien Arnol, Danila Bredikhin, Yonatan Deloro, Britta Velten, John C Marioni, and Oliver Stegle. 2020. MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data. Genome biology 21, 1 (2020), 1--17.

2. Clustering with the Average Silhouette Width

3. Peter W Battaglia Jessica B Hamrick Victor Bapst Alvaro Sanchez-Gonzalez Vinicius Zambaldi Mateusz Malinowski Andrea Tacchetti David Raposo Adam Santoro Ryan Faulkner etal 2018. Relational inductive biases deep learning and graph networks. ArXiv preprint (2018). Peter W Battaglia Jessica B Hamrick Victor Bapst Alvaro Sanchez-Gonzalez Vinicius Zambaldi Mateusz Malinowski Andrea Tacchetti David Raposo Adam Santoro Ryan Faulkner et al. 2018. Relational inductive biases deep learning and graph networks. ArXiv preprint (2018).

4. Joint profiling of chromatin accessibility and gene expression in thousands of single cells

5. Zhi-Jie Cao and Ge Gao . 2022. Multi-omics single-cell data integration and regulatory inference with graph-linked embedding. Nature Biotechnology ( 2022 ), 1--9. Zhi-Jie Cao and Ge Gao. 2022. Multi-omics single-cell data integration and regulatory inference with graph-linked embedding. Nature Biotechnology (2022), 1--9.

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