From Geospatial to Spatial -Omics

Author:

Moses Lambda1

Affiliation:

1. Lior Pachter lab at Caltech

Abstract

When Los Angeles is mentioned, cycling is usually not the first thing that comes to mind. However, during my past 10 years in LA studying molecular biology and bioinformatics, my bike trips through the geographical space of LA have inspired many ideas in my research in spatial data analysis in bioinformatics. I have written software to bring decades of research in geospatial data analysis to spatial -omics, as my trips make me ponder on spatial phenomena in general.

Funder

NIH

Publisher

Association for Computing Machinery (ACM)

Subject

General Medicine

Reference10 articles.

1. Detection in situ of genomic regulatory elements;O'Kane C. J.;Drosophila. Proc. Natl. Acad. Sci. U. S. A.,1987

2. Museum of spatial transcriptomics;Moses L.;Nat. Methods,2022

3. Voyager: exploratory single-cell genomics data analysis with geospatial statistics

4. A Computer Movie Simulating Urban Growth in the Detroit Region

5. The Contiguity Ratio and Statistical Mapping

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