Hardware Acceleration of the Pair-HMM Algorithm for DNA Variant Calling

Author:

Huang Sitao1,Manikandan Gowthami Jayashri1,Ramachandran Anand1,Rupnow Kyle2,Hwu Wen-mei W.1,Chen Deming1

Affiliation:

1. University of Illinois at Urbana-Champaign, Urbana, IL, USA

2. Advanced Digital Sciences Center, Singapore, Singapore

Funder

IBM Faculty Award

C-FAR

Publisher

ACM

Cited by 26 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

1. ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-Efficient Genome Analysis;ACM Transactions on Architecture and Code Optimization;2023-12-28

2. FSSD: FPGA-Based Emulator for SSDs;2023 33rd International Conference on Field-Programmable Logic and Applications (FPL);2023-09-04

3. An FPGA Accelerator for Genome Variant Calling;ACM Transactions on Reconfigurable Technology and Systems;2023-09

4. “Performance Evaluation of Variant Calling Tools for Human and Microbial Genomes”;2023 International Conference on Emerging Trends in Networks and Computer Communications (ETNCC);2023-08-16

5. Invited: Algorithms and Architectures for Accelerating Long Read Sequence Analysis;2023 60th ACM/IEEE Design Automation Conference (DAC);2023-07-09

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