TooT-BERT-C: A study on discriminating ion channels from membrane proteins based on the primary sequence’s contextual representation from BERT models-Reference-Cited by-同舟云学术

TooT-BERT-C: A study on discriminating ion channels from membrane proteins based on the primary sequence’s contextual representation from BERT models

Published:2022-09-18 Issue: Volume: Page:
ISSN:
Container-title:Proceedings of the 9th International Conference on Bioinformatics Research and Applications
language:
Short-container-title:

Author:

Ghazikhani Hamed¹^ORCID,Butler Gregory¹^ORCID

Affiliation:

1. Computer Science, Concordia University, Canada

Publisher

ACM

Link

https://dl.acm.org/doi/pdf/10.1145/3569192.3569196

Reference30 articles.

1. Integrative approach for detecting membrane proteins;Alballa Munira;BMC Bioinformatics,2020

2. Basic local alignment search tool

3. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

4. Rolf Apweiler , Amos Bairoch , Cathy H. Wu , Winona C. Barker , Brigitte Boeckmann , Serenella Ferro , Elisabeth Gasteiger , Hongzhan Huang , Rodrigo Lopez , Michele Magrane , Maria J. Martin , Darren A. Natale , Claire O’Donovan , Nicole Redaschi , and Lai‐Su L. Yeh . 2004. UniProt: The universal protein knowledgebase. Nucleic Acids Research 32 (Jan . 2004 ), D115–D119. Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria J. Martin, Darren A. Natale, Claire O’Donovan, Nicole Redaschi, and Lai‐Su L. Yeh. 2004. UniProt: The universal protein knowledgebase. Nucleic Acids Research 32 (Jan. 2004), D115–D119.

5. Artificial intelligence, machine learning and deep learning in ion channel bioinformatics;Ashrafuzzaman Md;Membranes,2021

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Exploiting protein language models for the precise classification of ion channels and ion transporters;2023-07-12

2. Enhanced identification of membrane transport proteins: a hybrid approach combining ProtBERT-BFD and convolutional neural networks;Journal of Integrative Bioinformatics;2023-06-01