Accelerating the quality control of genetic sequences through stream processing

Author:

Castellanos-Rodríguez Óscar1ORCID,Expósito Roberto R.1ORCID,Touriño Juan1ORCID

Affiliation:

1. CITIC, Universidade da Coruña, A Coruña, Spain

Funder

Ministry of Science and Innovation, Spain

Xunta de Galicia and FEDER funds of the European Union

Publisher

ACM

Reference23 articles.

1. BigBWA: approaching the Burrows–Wheeler aligner to Big Data technologies

2. Vito Adrian Cantu , Jeffrey Sadural , and Robert Edwards . 2019. PRINSEQ++ , a multi-threaded tool for fast and efficient quality control and preprocessing of sequencing datasets. Peer J Preprints 7 , Article e27553v1 ( 2019 ), 3 pages. Vito Adrian Cantu, Jeffrey Sadural, and Robert Edwards. 2019. PRINSEQ++, a multi-threaded tool for fast and efficient quality control and preprocessing of sequencing datasets. Peer J Preprints 7, Article e27553v1 (2019), 3 pages.

3. Wei-Chun Chung , Jan-Ming Ho , Chung-Yen Lin , and Der-Tsai Lee . 2017 . CloudEC: A MapReduce-based algorithm for correcting errors in next-generation sequencing big data . In Proceedings of the 2017 IEEE International Conference on Big Data (IEEE BigData 2017). Boston, MA, USA, 2836--2842. Wei-Chun Chung, Jan-Ming Ho, Chung-Yen Lin, and Der-Tsai Lee. 2017. CloudEC: A MapReduce-based algorithm for correcting errors in next-generation sequencing big data. In Proceedings of the 2017 IEEE International Conference on Big Data (IEEE BigData 2017). Boston, MA, USA, 2836--2842.

4. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

5. Columbia Genome Center . [n. d.]. Genome sequencing: Defining your experiment. Retrieved Dec. 2022 from https://systemsbiology.columbia.edu/genome-sequencing-defining-your-experiment Columbia Genome Center. [n. d.]. Genome sequencing: Defining your experiment. Retrieved Dec. 2022 from https://systemsbiology.columbia.edu/genome-sequencing-defining-your-experiment

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