Alphabet-Independent Compressed Text Indexing

Author:

Belazzougui Djamal1,Navarro Gonzalo2

Affiliation:

1. Université Paris Diderot

2. University of Chile

Abstract

Self-indexes are able to represent a text asymptotically within the information-theoretic lower bound under the k th order entropy model and offer access to any text substring and indexed pattern searches. Their time complexities are not optimal, however; in particular, they are always multiplied by a factor that depends on the alphabet size. In this article, we achieve, for the first time, full alphabet independence in the time complexities of self-indexes while retaining space optimality. We also obtain some relevant byproducts.

Funder

Agence Nationale de la Recherche

Millennium Institute for Cell Dynamics and Biotechnology

Publisher

Association for Computing Machinery (ACM)

Subject

Mathematics (miscellaneous)

Reference47 articles.

1. Fast text searching for regular expressions or automaton searching on tries

2. R. Baeza-Yates and B. Ribeiro-Neto. 2011. Modern Information Retrieval (2nd ed.). Addison-Wesley. R. Baeza-Yates and B. Ribeiro-Neto. 2011. Modern Information Retrieval (2nd ed.). Addison-Wesley.

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