Optimal sequence length requirements for phylogenetic tree reconstruction with indels-Reference-Cited by-同舟云学术

Optimal sequence length requirements for phylogenetic tree reconstruction with indels

Published:2019-06-23 Issue: Volume: Page:
ISSN:
Container-title:Proceedings of the 51st Annual ACM SIGACT Symposium on Theory of Computing
language:
Short-container-title:

Author:

Ganesh Arun¹,Zhang Qiuyi (Richard)¹

Affiliation:

1. University of California at Berkeley, USA

Funder

National Science Foundation

Publisher

ACM

Link

https://dl.acm.org/doi/pdf/10.1145/3313276.3316345

Reference35 articles.

1. Alexandr Andoni Mark Braverman and Avinatan Hassidim. 2010. Phylogenetic reconstruction with insertions and deletions. Preprint (2010). Alexandr Andoni Mark Braverman and Avinatan Hassidim. 2010. Phylogenetic reconstruction with insertions and deletions. Preprint (2010).

2. Alexandr Andoni Constantinos Daskalakis Avinatan Hassidim and Sebastien Roch. 2012. Global alignment of molecular sequences via ancestral state reconstruction. Stochastic Processes and their Applications 122 12 (2012) 3852–3874. Alexandr Andoni Constantinos Daskalakis Avinatan Hassidim and Sebastien Roch. 2012. Global alignment of molecular sequences via ancestral state reconstruction. Stochastic Processes and their Applications 122 12 (2012) 3852–3874.

3. The Performance of Neighbor-Joining Methods of Phylogenetic Reconstruction

4. Fast Phylogenetic Tree Reconstruction Using Locality-Sensitive Hashing

5. Peter Buneman. 1974. Peter Buneman. 1974.

Cited by 5 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Pairwise sequence alignment at arbitrarily large evolutionary distance;The Annals of Applied Probability;2024-06-01

2. Species tree estimation under joint modeling of coalescence and duplication: Sample complexity of quartet methods;The Annals of Applied Probability;2022-12-01

3. An impossibility result for phylogeny reconstruction from k-mer counts;The Annals of Applied Probability;2022-12-01

4. A simple and rapid approach for human herpesvirus type 8 subtype characterization using single base extension;Letters in Applied Microbiology;2021-06-11

5. Statistically consistent and computationally efficient inference of ancestral DNA sequences in the TKF91 model under dense taxon sampling;Bulletin of Mathematical Biology;2020-01-22