Parallelizing cryo-EM 3D reconstruction on GPU cluster with a partitioned and streamed model-Reference-Cited by-同舟云学术

Parallelizing cryo-EM 3D reconstruction on GPU cluster with a partitioned and streamed model

Published:2019-06-26 Issue: Volume: Page:
ISSN:
Container-title:Proceedings of the ACM International Conference on Supercomputing
language:
Short-container-title:

Author:

Wang Kunpeng¹,Xu Shizhen²,Fu Haohuan¹,Yu Hongkun¹,Zhao Wenlai¹,Yang Guangwen¹

Affiliation:

1. Tsinghua University, Wuxi, China

2. Tsinghua University

Publisher

ACM

Link

https://dl.acm.org/doi/pdf/10.1145/3330345.3330347

Reference37 articles.

1. A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function

2. Soojay Banerjee Alberto Bartesaghi Alan Merk Prashant Rao Stacie L Bulfer Yongzhao Yan Neal Green Barbara Mroczkowski R Jeffrey Neitz Peter Wipf etal 2016. 2.3 Å resolution cryo-EM structure of human p97 and mechanism of allosteric inhibition. Science 351 6275 (2016) 871--875. Soojay Banerjee Alberto Bartesaghi Alan Merk Prashant Rao Stacie L Bulfer Yongzhao Yan Neal Green Barbara Mroczkowski R Jeffrey Neitz Peter Wipf et al. 2016. 2.3 Å resolution cryo-EM structure of human p97 and mechanism of allosteric inhibition. Science 351 6275 (2016) 871--875.

3. Sean Baxter. 2016. moderngpu 2.0: Patterns and behaviors for GPU computing. http://moderngpu.github.io/moderngpu Sean Baxter. 2016. moderngpu 2.0: Patterns and behaviors for GPU computing. http://moderngpu.github.io/moderngpu

4. 2.8 Å resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. RELION Software Performance Optimization for the CPU+DCU Heterogeneous Platform;2024 3rd International Conference on Big Data, Information and Computer Network (BDICN);2024-01-12

2. A Multi-GPU Design for Large Size Cryo-EM 3D Reconstruction;2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS);2021-05