diBELLA
Author:
Affiliation:
1. University of California at Berkeley and Lawrence Berkeley National Laboratory
2. Lawrence Berkeley National Laboratory
Funder
DOE/Exascale Computing Project
Publisher
ACM
Link
https://dl.acm.org/doi/pdf/10.1145/3337821.3337919
Reference37 articles.
1. Basic local alignment search tool
2. Konstantin Berlin Sergey Koren Chen-Shan Chin James P Drake Jane M Landolin and Adam M Phillippy. 2015. Assembling large genomes with single-molecule sequencing and locality-sensitive hashing. Nature biotechnology 33 6 (2015) 623--630. Konstantin Berlin Sergey Koren Chen-Shan Chin James P Drake Jane M Landolin and Adam M Phillippy. 2015. Assembling large genomes with single-molecule sequencing and locality-sensitive hashing. Nature biotechnology 33 6 (2015) 623--630.
3. Space/time trade-offs in hash coding with allowable errors
4. Mark J. Chaisson and Glenn Tesler. 2012. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory. BMC Bioinformatics 13 1 (19 Sep 2012) 238. Mark J. Chaisson and Glenn Tesler. 2012. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory. BMC Bioinformatics 13 1 (19 Sep 2012) 238.
Cited by 14 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献
1. Invited: Accelerating Genome Analysis via Algorithm-Architecture Co-Design;2023 60th ACM/IEEE Design Automation Conference (DAC);2023-07-09
2. A survey of mapping algorithms in the long-reads era;Genome Biology;2023-06-01
3. Designing Efficient SIMD Kernels for High Performance Sequence Alignment;2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW);2023-05
4. A survey of mapping algorithms in the long-reads era;2022-05-22
5. Scaling Generalized N-Body Problems, A Case Study from Genomics;50th International Conference on Parallel Processing;2021-08-09
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