Mutation Tree Reconstruction of Tumor Cells on FPGAs Using a Bit-Level Matrix Representation

Author:

Opdenhövel Jan-Oliver1ORCID,Plessl Christian1ORCID,Kenter Tobias1ORCID

Affiliation:

1. Paderborn Center for Parallel Computing, Paderborn University, Germany

Publisher

ACM

Reference6 articles.

1. Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: A Race Between FPGA and GPU

2. Mercury BLASTP: Accelerating Protein Sequence Alignment;Jacob Arpith;ACM Transactions on Reconfigurable Technology and Systems (TRETS),2008

3. Katharina Jahn , Jack Kuipers , and Niko Beerenwinkel . 2016. Tree inference for single-cell data. Genome Biology 17, 86 ( 2016 ). Katharina Jahn, Jack Kuipers, and Niko Beerenwinkel. 2016. Tree inference for single-cell data. Genome Biology 17, 86 (2016).

4. Jack Kuipers , Katharina Jahn , Benjamin  J Raphael , and Niko Beerenwinkel . 2017. Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors. Genome research 27, 11 ( 2017 ), 1885–1894. https://doi.org/10.1101/gr.220707.117 10.1101/gr.220707.117 Jack Kuipers, Katharina Jahn, Benjamin J Raphael, and Niko Beerenwinkel. 2017. Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors. Genome research 27, 11 (2017), 1885–1894. https://doi.org/10.1101/gr.220707.117

5. A Smith-Waterman Systolic Cell

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1. A Computation of the Ninth Dedekind Number using FPGA Supercomputing;ACM Transactions on Reconfigurable Technology and Systems;2024-07-02

2. Optimisation and Evaluation of Breadth First Search with oneAPI/SYCL on Intel FPGAs: from Describing Algorithms to Describing Architectures;Proceedings of the 12th International Workshop on OpenCL and SYCL;2024-04-08

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