Named Entity Recognition for Biomedical Patent Text using Bi-LSTM Variants

Author:

Saad Farag1

Affiliation:

1. FIZ karlsruhe - Leibniz Institute For Information Infrastructure, Eggenstein-Leopoldshafen, Baden Württemberg

Publisher

ACM

Reference17 articles.

1. Saber A Akhondi Hinnerk Rey Markus Schwörer Michael Maier John Toomey Heike Nau Gabriele Ilchmann Mark Sheehan Matthias Irmer Claudia Bobach Marius Doornenbal Michelle Gregory and Jan A Kors. 2019. Automatic identification of relevant chemical compounds from patents. Database 2019 (01 2019). https://doi.org/10.1093/database/baz001 Saber A Akhondi Hinnerk Rey Markus Schwörer Michael Maier John Toomey Heike Nau Gabriele Ilchmann Mark Sheehan Matthias Irmer Claudia Bobach Marius Doornenbal Michelle Gregory and Jan A Kors. 2019. Automatic identification of relevant chemical compounds from patents. Database 2019 (01 2019). https://doi.org/10.1093/database/baz001

2. Marco Basaldella Lenz Furrer Carlo Tasso and Fabio Rinaldi. 2017. Entity recognition in the biomedical domain using a hybrid approach. Journal of Biomedical Semantics 8 (11 2017). https://doi.org/10.1186/s13326-017-0157-6 Marco Basaldella Lenz Furrer Carlo Tasso and Fabio Rinaldi. 2017. Entity recognition in the biomedical domain using a hybrid approach. Journal of Biomedical Semantics 8 (11 2017). https://doi.org/10.1186/s13326-017-0157-6

3. A unified architecture for natural language processing

4. Ronan Collobert Jason Weston Léon Bottou Michael Karlen Koray Kavukcuoglu and Pavel P. Kuksa. 2011. Natural Language Processing (almost) from Scratch. Computing Research Repository - CORR abs/1103.0398 (2011). http://arxiv.org/abs/1103.0398 Ronan Collobert Jason Weston Léon Bottou Michael Karlen Koray Kavukcuoglu and Pavel P. Kuksa. 2011. Natural Language Processing (almost) from Scratch. Computing Research Repository - CORR abs/1103.0398 (2011). http://arxiv.org/abs/1103.0398

5. Thanh Hai Dang Hoang-Quynh Le Trang M Nguyen and Sinh T Vu. 2018. D3NER: biomedical named entity recognition using CRF-biLSTM improved with fine-tuned embeddings of various linguistic information. Bioinformatics 34 20 (04 2018) 3539--3546. https://doi.org/10.1093/bioinformatics/bty356 Thanh Hai Dang Hoang-Quynh Le Trang M Nguyen and Sinh T Vu. 2018. D3NER: biomedical named entity recognition using CRF-biLSTM improved with fine-tuned embeddings of various linguistic information. Bioinformatics 34 20 (04 2018) 3539--3546. https://doi.org/10.1093/bioinformatics/bty356

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