Analysis of the inheritance of the marker SCAR-R1A, linked to the Rpf1 red stele root rot resistance gene, in strawberry hybrid progeny

Author:

Lyzhin A. S.1ORCID,Luk’yanchuk I. V.1ORCID

Affiliation:

1. I.V. Michurin Federal Science Center

Abstract

Background. Resistance to pathogens is an important breeding trait of a cultivar. Red stele root rot (Phytophthora fragariae var. fragariae Hickman) is a dangerous root disease. Revealing the patterns of resistance inheritance and identifying promising genotypes is an important stage in the development of strawberry cultivars resistant to red stele root rot. The purpose of the study was to identify patterns of inheritance for the SCAR-R1A marker, linked to the Rpf1 red stele root rot resistance gene, in the strawberry hybrid combinations.Materials and methods. The target materials were the strawberry cultivars ‘Bylinnaya’, ‘Olimpiyskaya Nadezhda’, ‘Privlekatelnaya’ and ‘Feyyerverk’, and hybrid seedlings of the cross combinations Bylinnaya × Olimpiyskaya Nadezhda, Bylinnaya × Feyyerverk, Olimpiyskaya Nadezhda × Bylinnaya, Privlekatelnaya × Bylinnaya, and Feyyerverk × Bylinnaya. The Rpf1 gene was identified with the marker SCAR-R1A.Results and conclusion. For the hybrid combination Bylinnaya × Olimpiyskaya Nadezhda, the percentage of seedlings with an Rpf1 resistance allele was 33.3%. For the combination Bylinnaya × Feyyerverk, their percentage was 37.2%; for Olimpiyskaya Nadezhda × Bylinnaya, 39.4%; for Privlekatelnaya × Bylinnaya, 39.6%; and for Feyyerverk × Bylinnaya, 36.2%. The average percentage of seedlings with an Rpf1 allele for the studied combinations was 37.1%. Assessment of the compliance between the observed segregation and theoretical one according to the χ2  criterion confirmed the monogenic character of the studied trait and the Mendelian ratio of inheritance frequencies for the marker fragments of the Rpf1 gene as 1 : 1. Therefore, all identified seedlings with an Rpf1 allele are characterized by a heterozygous genotype. Strawberry hybrids promising for breeding were identified: 62-41 (Bylinnaya × Feyyerverk), 65-17, 65-24 (Olimpiyskaya Nadezhda × Bylinnaya), and 69-29 (Feyyerverk × Bylinnaya).

Publisher

FSBSI FRC N.I. Vavilov All-Russian Institute of Plant Genetic Resources

Subject

Plant Science,Genetics,Molecular Biology,Physiology,Biochemistry,Ecology, Evolution, Behavior and Systematics,Biotechnology

Reference14 articles.

1. Adams T.M., Armitage A.D., Sobczyk M.K., Bates H.J., Tabima J.F., Kronmiller B.A. et al. Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races. Frontiers in Microbiology. 2020;11:490. DOI: 10.3389/fmicb.2020.00490

2. Baumgartner I.O., Patocchi A., Frey J.E., Peil A., Kellerhals M. Breeding elite lines of apple carrying pyramided homozygous resistance genes against apple scab and resistance against powdery mildew and fire blight. Plant Molecular Biology Reporter. 2015;33:1573-1583. DOI: 10.1007/s11105-015-0858-x

3. Haymes K.M., Van de Weg W.E., Arens P., Maas J.L., Vosman B., Den Nijs A.P.M. Development of SCAR markers linked to a Phytophthora fragariae resistance gene and their assessment in European and North American strawberry genotypes. Journal of the American Society for Horticultural Science. 2000;125(3):330-339. DOI: 10.21273/JASHS.125.3.330

4. Hughes K.J.D., Inman A.J., Cooke D.E.L. Comparative testing of nested PCR-based methods with bait-plant tests for detecting Phytophthora fragariae var. fragariae in infected strawberry roots from fruit crops in the UK. EPPO Bulletin. 2000;30(3-4):533-538. DOI: 10.1111/j.1365-2338.2000.tb00942.x

5. Luk’yanchuk I.V., Lyzhin A.S., Kozlova I.I. Analysis of strawberry genetic collection (Fragaria L.) for Rca2 and Rpf1 genes with molecular markers. Vavilov Journal of Genetics and Breeding. 2018;22(7):795-799. DOI: 10.18699/VJ18.423

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