Application of Next Generation Sequencing on Norovirus‐contaminated oyster samples

Author:

Ollivier Joanna1,Lowther James2,Desdouits Marion1,Schaeffer Julien1,Wacrenier Candice1,Oude Munnink Bas B.3,Besnard Alban1,Mota Batista Frederico2,Stapleton Tina2,Schultz Anna Charlotte4,Aarestrup Frank4,Koopmans Marion3,de Graaf Miranda3,Le Guyader Soizick1

Affiliation:

1. Ifremer, Microbiology laboratory France

2. Centre for Environment, Fisheries and Aquaculture Science UK

3. Erasmus University Medical Center the Netherlands

4. Technical University of Denmark Denmark

Publisher

Wiley

Subject

General Medicine

Reference69 articles.

1. Andrew S, 2010. Fast QC A quality control tool for high throughput sequence data. https://www.bioinformatics.babraham.ac.uk/projects/fastqc/

2. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single‐Cell Sequencing;Bankevich;Journal of Computational Biology,2012

3. Norwalk‐like virus sequences in mineral waters: one year monitoring of three brands;Beuret;Applied and Environmental Microbiology,2002

4. Monitoring human enteric viruses in wastewater and relevance to infections encountered in the clinical setting: a one‐year experiment in central France, 2014 to 2015;Bisseux;Euro Surveillance Feb,2018

5. Bonny P, Schaeffer J, Besnard A, Desdouits M, Essia Ngang JJ, Le Guyader FS, 2021. Human and Animal RNA Virus Diversity Detected by Metagenomics in Cameroonian Clams. Frontiers in Microbiology 12: 770385.

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