Unleashing Cell-Intrinsic Inflammation as a Strategy to Kill AML Blasts

Author:

Ellegast Jana M.12ORCID,Alexe Gabriela123ORCID,Hamze Amanda1,Lin Shan12ORCID,Uckelmann Hannah J.1,Rauch Philipp J.24,Pimkin Maxim1,Ross Linda S.1,Dharia Neekesh V.12ORCID,Robichaud Amanda L.1,Conway Amy Saur1,Khalid Delan1,Perry Jennifer A.1,Wunderlich Mark5ORCID,Benajiba Lina16,Pikman Yana12ORCID,Nabet Behnam7ORCID,Gray Nathanael S.8ORCID,Orkin Stuart H.1ORCID,Stegmaier Kimberly12

Affiliation:

1. 1Department of Pediatric Oncology, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.

2. 2The Broad Institute of MIT and Harvard, Cambridge, Massachusetts.

3. 3Bioinformatics Graduate Program, Boston University, Boston, Massachusetts.

4. 4Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts.

5. 5Division of Experimental Hematology and Cancer Biology, Cancer and Blood Disease Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.

6. 6Université de Paris, INSERM U944 and CNRS 7212, Institut de Recherche Saint Louis, Hôpital Saint Louis, APHP, Paris, France.

7. 7Human Biology Division, Fred Hutchinson Cancer Center, Seattle, Washington.

8. 8Department of Chemical and Systems Biology, Chem-H and Stanford Cancer Institute, Stanford Medicine, Stanford University, Stanford, California.

Abstract

Abstract Leukemic blasts are immune cells gone awry. We hypothesized that dysregulation of inflammatory pathways contributes to the maintenance of their leukemic state and can be exploited as cell-intrinsic, self-directed immunotherapy. To this end, we applied genome-wide screens to discover genetic vulnerabilities in acute myeloid leukemia (AML) cells implicated in inflammatory pathways. We identified the immune modulator IRF2BP2 as a selective AML dependency. We validated AML cell dependency on IRF2BP2 with genetic and protein degradation approaches in vitro and genetically in vivo. Chromatin and global gene-expression studies demonstrated that IRF2BP2 represses IL1β/TNFα signaling via NFκB, and IRF2BP2 perturbation results in an acute inflammatory state leading to AML cell death. These findings elucidate a hitherto unexplored AML dependency, reveal cell-intrinsic inflammatory signaling as a mechanism priming leukemic blasts for regulated cell death, and establish IRF2BP2-mediated transcriptional repression as a mechanism for blast survival. Significance: This study exploits inflammatory programs inherent to AML blasts to identify genetic vulnerabilities in this disease. In doing so, we determined that AML cells are dependent on the transcriptional repressive activity of IRF2BP2 for their survival, revealing cell-intrinsic inflammation as a mechanism priming leukemic blasts for regulated cell death. See related commentary by Puissant and Medyouf, p. 1617. This article is highlighted in the In This Issue feature, p. 1599

Publisher

American Association for Cancer Research (AACR)

Subject

Oncology

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