Ketogenic Diet Alters the Epigenetic and Immune Landscape of Prostate Cancer to Overcome Resistance to Immune Checkpoint Blockade Therapy

Author:

Murphy Sean1ORCID,Rahmy Sharif12ORCID,Gan Dailin3ORCID,Liu Guoqiang12ORCID,Zhu Yini12ORCID,Manyak Maxim1ORCID,Duong Loan12ORCID,He Jianping1ORCID,Schofield James H.1ORCID,Schafer Zachary T.1ORCID,Li Jun23ORCID,Lu Xuemin1ORCID,Lu Xin124ORCID

Affiliation:

1. 1Department of Biological Sciences, Boler-Parseghian Center for Rare and Neglected Diseases, Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana.

2. 2Integrated Biomedical Sciences Graduate Program, University of Notre Dame, Notre Dame, Indiana.

3. 3Department of Applied and Computational Mathematics and Statistics, University of Notre Dame, Notre Dame, Indiana.

4. 4Tumor Microenvironment and Metastasis Program, Indiana University Melvin and Bren Simon Comprehensive Cancer Center, Indianapolis, Indiana.

Abstract

Abstract Resistance to immune checkpoint blockade (ICB) therapy represents a formidable clinical challenge limiting the efficacy of immunotherapy. In particular, prostate cancer poses a challenge for ICB therapy due to its immunosuppressive features. A ketogenic diet (KD) has been reported to enhance response to ICB therapy in some other cancer models. However, adverse effects associated with continuous KD were also observed, demanding better mechanistic understanding and optimized regimens for using KD as an immunotherapy sensitizer. In this study, we established a series of ICB-resistant prostate cancer cell lines and developed a highly effective strategy of combining anti-PD1 and anti-CTLA4 antibodies with histone deacetylase inhibitor (HDACi) vorinostat, a cyclic KD (CKD), or dietary supplementation of the ketone body β-hydroxybutyrate (BHB), which is an endogenous HDACi. CKD and BHB supplementation each delayed prostate cancer tumor growth as monotherapy, and both BHB and adaptive immunity were required for the antitumor activity of CKD. Single-cell transcriptomic and proteomic profiling revealed that HDACi and ketogenesis enhanced ICB efficacy through both cancer cell–intrinsic mechanisms, including upregulation of MHC class I molecules, and -extrinsic mechanisms, such as CD8+ T-cell chemoattraction, M1/M2 macrophage rebalancing, monocyte differentiation toward antigen-presenting cells, and diminished neutrophil infiltration. Overall, these findings illuminate a potential clinical path of using HDACi and optimized KD regimens to enhance ICB therapy for prostate cancer. Significance: Optimized cyclic ketogenic diet and 1,3-butanediol supplementation regimens enhance the efficacy of immune checkpoint blockade in prostate cancer through epigenetic and immune modulations, providing dietary interventions to sensitize tumors to immunotherapy.

Funder

National Cancer Institute

Indiana Clinical and Translational Sciences Institute

DOD Prostate Cancer Research Program

Congressionally Directed Medical Research Programs

Boler Family Foundation

American Institute for Cancer Research

Publisher

American Association for Cancer Research (AACR)

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