Spatial Positioning of Immune Hotspots Reflects the Interplay between B and T Cells in Lung Squamous Cell Carcinoma

Author:

Zhang Hanyun12ORCID,AbdulJabbar Khalid12ORCID,Moore David A.34ORCID,Akarca Ayse4ORCID,Enfield Katey S.S.5ORCID,Jamal-Hanjani Mariam367ORCID,Raza Shan E. Ahmed12ORCID,Veeriah Selvaraju3ORCID,Salgado Roberto8ORCID,McGranahan Nicholas39ORCID,Le Quesne John101112ORCID,Swanton Charles356ORCID,Marafioti Teresa4ORCID,Yuan Yinyin12ORCID

Affiliation:

1. 1Centre for Evolution and Cancer, The Institute of Cancer Research, London, United Kingdom.

2. 2Division of Molecular Pathology, The Institute of Cancer Research, London, United Kingdom.

3. 3Cancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London, United Kingdom.

4. 4Department of Cellular Pathology, University College London Hospitals, London, United Kingdom.

5. 5Cancer Evolution and Genome Instability Laboratory, The Francis Crick Institute, London, United Kingdom.

6. 6Department of Oncology, University College London Hospitals, London, United Kingdom.

7. 7Cancer Metastasis Lab, University College London Cancer Institute, London, United Kingdom.

8. 8Department of Pathology, ZAS Hospitals, Antwerp, Belgium.

9. 10Cancer Genome Evolution Research Group, Cancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London, United Kingdom.

10. 11Cancer Research UK Beatson Institute, Glasgow, United Kingdom.

11. 12School of Cancer Sciences, University of Glasgow, Glasgow, United Kingdom.

12. 13NHS Greater Glasgow and Clyde Pathology Department, Queen Elizabeth University Hospital, London, United Kingdom.

Abstract

Abstract Beyond tertiary lymphoid structures, a significant number of immune-rich areas without germinal center-like structures are observed in non–small cell lung cancer. Here, we integrated transcriptomic data and digital pathology images to study the prognostic implications, spatial locations, and constitution of immune rich areas (immune hotspots) in a cohort of 935 patients with lung cancer from The Cancer Genome Atlas. A high intratumoral immune hotspot score, which measures the proportion of immune hotspots interfacing with tumor islands, was correlated with poor overall survival in lung squamous cell carcinoma but not in lung adenocarcinoma. Lung squamous cell carcinomas with high intratumoral immune hotspot scores were characterized by consistent upregulation of B-cell signatures. Spatial statistical analyses conducted on serial multiplex IHC slides further revealed that only 4.87% of peritumoral immune hotspots and 0.26% of intratumoral immune hotspots were tertiary lymphoid structures. Significantly lower densities of CD20+CXCR5+ and CD79b+ B cells and less diverse immune cell interactions were found in intratumoral immune hotspots compared with peritumoral immune hotspots. Furthermore, there was a negative correlation between the percentages of CD8+ T cells and T regulatory cells in intratumoral but not in peritumoral immune hotspots, with tertiary lymphoid structures excluded. These findings suggest that the intratumoral immune hotspots reflect an immunosuppressive niche compared with peritumoral immune hotspots, independent of the distribution of tertiary lymphoid structures. A balance toward increased intratumoral immune hotspots is indicative of a compromised antitumor immune response and poor outcome in lung squamous cell carcinoma. Significance: Intratumoral immune hotspots beyond tertiary lymphoid structures reflect an immunosuppressive microenvironment, different from peritumoral immune hotspots, warranting further study in the context of immunotherapies.

Funder

Cancer Research UK

Breast Cancer Now

Rosetrees Trust

Children's Cancer and Leukaemia Group

National Institutes of Health

Congressionally Directed Medical Research Programs

European Commission

NIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer Research

Wellcome Trust

Novo Nordisk Foundation Center for Basic Metabolic Research

Royal Society

University College London Hospitals Biomedical Research Centre

Breast Cancer Research Foundation

European Research Council

Horizon 2020 Framework Programme

HORIZON EUROPE Marie Sklodowska-Curie Actions

Publisher

American Association for Cancer Research (AACR)

Subject

Cancer Research,Oncology

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