LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data-Reference-Cited by-同舟云学术

LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data

Published:2020-04-01 Issue:4 Volume:10 Page:1193-1196
ISSN:2160-1836
Container-title:G3 Genes|Genomes|Genetics
language:en
Short-container-title:

Author:

Fukasawa Yoshinori¹,Ermini Luca^ORCID,Wang Hai,Carty Karen,Cheung Min-Sin

Affiliation:

1. King Abdullah University of Science and Technology (KAUST), Core Labs, Thuwal, Makkah, Saudi Arabia, 23955-6900

Abstract

Abstract We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and LongQC covers all major TGS platforms. LongQC processes and visualizes those statistics automatically and quickly.

Publisher

Oxford University Press (OUP)

Subject

Genetics(clinical),Genetics,Molecular Biology

Link

http://academic.oup.com/g3journal/article-pdf/10/4/1193/37124287/g3journal1193.pdf

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