PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research

Author:

Weil Heinrich Lukas1ORCID,Schneider Kevin1ORCID,Tschöpe Marcel2ORCID,Bauer Jonathan2ORCID,Maus Oliver1ORCID,Frey Kevin1ORCID,Brilhaus Dominik3ORCID,Martins Rodrigues Cristina2ORCID,Doniparthi Gajendra4ORCID,Wetzels Florian5ORCID,Lukasczyk Jonas5ORCID,Kranz Angela6ORCID,Grüning Björn7ORCID,Zimmer David1ORCID,Deßloch Stefan4ORCID,von Suchodoletz Dirk2ORCID,Usadel Björn36ORCID,Garth Christoph5ORCID,Mühlhaus Timo1ORCID

Affiliation:

1. Computational Systems Biology University of Kaiserslautern‐Landau Kaiserslautern Germany

2. Computer Center University of Freiburg Freiburg im Breisgau Germany

3. Cluster of Excellence on Plant Sciences (CEPLAS) Heinrich Heine University Düsseldorf Düsseldorf Germany

4. Heterogenous Information Systems University of Kaiserslautern‐Landau Kaiserslautern Germany

5. Scientific Visualization Lab University of Kaiserslautern‐Landau Kaiserslautern Germany

6. IBG‐4 Bioinformatics BioSC, Forschungszentrum Jülich Jülich Germany

7. Bioinformatics Group University of Freiburg Freiburg im Breisgau Germany

Abstract

SUMMARYIn modern reproducible, hypothesis‐driven plant research, scientists are increasingly relying on research data management (RDM) services and infrastructures to streamline the processes of collecting, processing, sharing, and archiving research data. FAIR (i.e., findable, accessible, interoperable, and reusable) research data play a pivotal role in enabling the integration of interdisciplinary knowledge and facilitating the comparison and synthesis of a wide range of analytical findings. The PLANTdataHUB offers a solution that realizes RDM of scientific (meta)data as evolving collections of files in a directory – yielding FAIR digital objects called ARCs – with tools that enable scientists to plan, communicate, collaborate, publish, and reuse data on the same platform while gaining continuous quality control insights. The centralized platform is scalable from personal use to global communities and provides advanced federation capabilities for institutions that prefer to host their own satellite instances. This approach borrows many concepts from software development and adapts them to fit the challenges of the field of modern plant science undergoing digital transformation. The PLANTdataHUB supports researchers in each stage of a scientific project with adaptable continuous quality control insights, from the early planning phase to data publication. The central live instance of PLANTdataHUB is accessible at (https://git.nfdi4plants.org), and it will continue to evolve as a community‐driven and dynamic resource that serves the needs of contemporary plant science.

Funder

Deutsche Forschungsgemeinschaft

Publisher

Wiley

Subject

Cell Biology,Plant Science,Genetics

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