Genomic epidemiology ofCryptococcusyeasts identifies adaptation to environmental niches underpinning infection across an African HIV/AIDS cohort

Author:

Vanhove Mathieu1,Beale Mathew A.123,Rhodes Johanna1,Chanda Duncan4,Lakhi Shabir4,Kwenda Geoffrey5,Molloy Sile2,Karunaharan Natasha2,Stone Neil2,Harrison Thomas S.2,Bicanic Tihana2,Fisher Matthew C.1

Affiliation:

1. Department of Infectious Disease Epidemiology; St Mary's Hospital; Imperial College London; London W2 1PG UK

2. Institute of Infection and Immunity; St. George's University of London; Blackshaw Road London SW17 0QT UK

3. Division of Infection & Immunity; University College London; Gower St London WC1E 6BT UK

4. School of Medicine; University of Zambia; Nationalist Road PO Box 50110 Lusaka Zambia

5. Department of Biomedical Sciences; University of Zambia; PO Box 32379 Lusaka Zambia

Funder

UK Natural Environmental Research Council

UK Medical Research Council

Publisher

Wiley

Subject

Genetics,Ecology, Evolution, Behavior and Systematics

Reference84 articles.

1. The UNITE database for molecular identification of fungi - recent updates and future perspectives;Abarenkov;New Phytologist,2010

2. A new method for non-parametric multivariate analysis of variance;Anderson;Austral Ecology,2001

3. Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities;Bazzicalupo;Fungal Ecology,2013

4. Genotypic diversity is associated with clinical outcome and phenotype in Cryptococcal Meningitis across Southern Africa;Beale;PLoS Neglected Tropical Diseases,2015

5. BIOCLIM - a bioclimate analysis and prediction system;Busby;Plant Protection Quarterly,1991

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