Rapid recovery of nuclear and mitochondrial genes by genome skimming from Northern Hemisphere freshwater crayfish

Author:

Grandjean Frederic1,Tan Mun Hua234,Gan Han Ming234ORCID,Lee Yin Peng23,Kawai Tadashi5,Distefano Robert J.6,Blaha Martin7,Roles Angela J.8,Austin Christopher M.234

Affiliation:

1. UMR CNRS 7267 Equipe Ecologie Evolution Symbiose; Laboratoire Ecologie et Biologie des Interactions; 5 rue Albert Turpin Poitiers Cedex France

2. School of Science; Monash University Malaysia; Jalan Lagoon Selatan Bandar Sunway 47500 Petaling Jaya Selangor Malaysia

3. Genomics Facility; Tropical Medicine and Biology Platform; Monash University Malaysia; Jalan Lagoon Selatan Bandar Sunway 47500 Petaling Jaya Selangor Malaysia

4. School of Life and Environmental Sciences; Deakin University; Geelong Victoria 3126 Australia

5. Fisheries Research Department; Wakkanai Fisheries Research Institute; 4-5-15 Suehiro Wakkanai-shi 097-0001 Hokkaido Japan

6. Missouri Department of Conservation; East Gans Road Columbia Missouri 65201 USA

7. Faculty of Fisheries and Protection of Waters; South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses; University of South Bohemia in České Budějovice; Zátiší 728/II Vodňany Czech Republic

8. Biology Department; Oberlin College, Oberlin; Ohio 44074 USA

Funder

Monash University

Publisher

Wiley

Subject

Genetics,Molecular Biology,Animal Science and Zoology,Ecology, Evolution, Behavior and Systematics

Reference70 articles.

1. TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations;Abascal;Nucleic Acids Research,2010

2. ExaBayes: massively parallel Bayesian tree inference for the whole-genome era;Aberer;Molecular Biology and Evolution,2014

3. Phylogeny of northern hemisphere freshwater crayfishes based on 16S rRNA gene analysis;Ahn;Korean Journal of Genetics,2006

4. The complete mitochondrial genome of the red-banded lobster Metanephrops thomsoni (Crustacea, Astacidea, Nephropidae): a novel gene order;Ahn;Mitochondrial DNA Part A,2016

5. Basic local alignment search tool;Altschul;Journal of Molecular Biology,1990

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