Extended‐volume image‐derived models of coronary microcirculation

Abstract

AbstractObjectiveRecent advances in tissue clearing and high‐throughput imaging have enabled the acquisition of extended‐volume microvasculature images at a submicron resolution. The objective of this study was to extract information from this type of images by integrating a sequence of 3D image processing steps on Terabyte scale datasets.MethodsWe acquired coronary microvasculature images throughout an entire short‐axis slice of a 3‐month‐old Wistar–Kyoto rat heart. This dataset covered 13 × 10 × 0.6 mm at a resolution of 0.933 × 0.933 × 1.866 μm and occupied 700 Gigabytes of disk space. We used chunk‐based image segmentation, combined with an efficient graph generation technique, to quantify the microvasculature in the large‐scale images. Specifically, we focused on the microvasculature with a vessel diameter up to 15 μm.ResultsMorphological data for the complete short‐axis ring were extracted within 16 h using this pipeline. From the analyses, we identified that microvessel lengths in the rat coronary microvasculature varied from 6 to 300 μm. However, their distribution was heavily skewed toward shorter lengths, with a mode of 16.5 μm. In contrast, vessel diameters ranged from 3 to 15 μm and had an approximately normal distribution of 6.5 ± 2 μm.ConclusionThe tools and techniques from this study will serve other investigations into the microcirculation, and the wealth of data from this study will enable the analysis of biophysical mechanisms using computer models.