Affiliation:
1. Imaging Platform Broad Institute of MIT and Harvard Cambridge Massachusetts USA
2. Department of Biochemistry and Tissue Biology Institute of Biology University of Campinas Campinas São Paulo Brazil
3. Center for Quantitative Cell Imaging University of Wisconsin‐Madison Madison Wisconsin USA
Abstract
AbstractCellProfiler is a widely used software for creating reproducible, reusable image analysis workflows without needing to code. In addition to the >90 modules that make up the main CellProfiler program, CellProfiler has a plugins system that allows for the creation of new modules which integrate with other Python tools or tools that are packaged in software containers. The CellProfiler‐plugins repository contains a number of these CellProfiler modules, especially modules that are experimental and/or dependency‐heavy. Here, we present an upgraded CellProfiler‐plugins repository, an example of accessing containerised tools, improved documentation and added citation/reference tools to facilitate the use and contribution of the community.
Funder
National Institute of General Medical Sciences
Chan Zuckerberg Initiative
Fundação de Amparo à Pesquisa do Estado de São Paulo
Subject
Histology,Pathology and Forensic Medicine
Cited by
1 articles.
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