The use of deep learning state‐of‐the‐art architectures for oral epithelial dysplasia grading: A comparative appraisal

Author:

Araújo Anna Luíza Damaceno12ORCID,Silva Viviane Mariano da3ORCID,Moraes Matheus Cardoso3ORCID,de Amorim Henrique Alves3ORCID,Fonseca Felipe Paiva4ORCID,Sant'Ana Maria Sissa Pereira4ORCID,Mesquita Ricardo Alves4ORCID,Mariz Bruno Augusto Linhares Almeida56ORCID,Pontes Hélder Antônio Rebelo7ORCID,de Souza Lucas Lacerda27ORCID,Saldivia‐Siracusa Cristina2ORCID,Khurram Syed Ali8ORCID,Pearson Alexander T.9ORCID,Martins Manoela Domingues10ORCID,Lopes Marcio Ajudarte2ORCID,Vargas Pablo Agustin2ORCID,Kowalski Luiz Paulo1112ORCID,Santos‐Silva Alan Roger2ORCID

Affiliation:

1. Head and Neck Surgery Department University of São Paulo Medical School São Paulo Brazil

2. Oral Diagnosis Department Piracicaba Dental School Piracicaba Brazil

3. Institute of Science and Technology Federal University of São Paulo São José dos Campos Brazil

4. Department of Oral Surgery and Pathology, School of Dentistry Federal University of Minas Gerais (UFMG) Belo Horizonte Brazil

5. Serviço de Odontologia Hospital Vila Nova Star, Rede D'Or São Paulo Brazil

6. Serviço de Medicina Bucal Hospital Sírio‐Libanês São Paulo Brazil

7. Service of Oral Pathology João de Barros Barreto University Hospital, Federal University of Pará Belém Brazil

8. Unit of Oral and Maxillofacial Pathology, School of Clinical Dentistry University of Sheffield Sheffield UK

9. Section of Hematology/Oncology, Department of Medicine University of Chicago Chicago Illinois USA

10. Department of Oral Pathology, School of Dentistry Federal University of Rio Grande do Sul Porto Alegre Brazil

11. Department of Head and Neck Surgery and Otorhinolaryngology A.C. Camargo Cancer Center São Paulo Brazil

12. Head and Neck Surgery Department and LIM 28 University of São Paulo Medical School São Paulo Brazil

Abstract

AbstractBackgroundDysplasia grading systems for oral epithelial dysplasia are a source of disagreement among pathologists. Therefore, machine learning approaches are being developed to mitigate this issue.MethodsThis cross‐sectional study included a cohort of 82 patients with oral potentially malignant disorders and correspondent 98 hematoxylin and eosin‐stained whole slide images with biopsied‐proven dysplasia. All whole‐slide images were manually annotated based on the binary system for oral epithelial dysplasia. The annotated regions of interest were segmented and fragmented into small patches and non‐randomly sampled into training/validation and test subsets. The training/validation data were color augmented, resulting in a total of 81,786 patches for training. The held‐out independent test set enrolled a total of 4,486 patches. Seven state‐of‐the‐art convolutional neural networks were trained, validated, and tested with the same dataset.ResultsThe models presented a high learning rate, yet very low generalization potential. At the model development, VGG16 performed the best, but with massive overfitting. In the test set, VGG16 presented the best accuracy, sensitivity, specificity, and area under the curve (62%, 62%, 66%, and 65%, respectively), associated with the higher loss among all Convolutional Neural Networks (CNNs) tested. EfficientB0 has comparable metrics and the lowest loss among all convolutional neural networks, being a great candidate for further studies.ConclusionThe models were not able to generalize enough to be applied in real‐life datasets due to an overlapping of features between the two classes (i.e., high risk and low risk of malignization).

Funder

Fundação de Amparo à Pesquisa do Estado de São Paulo

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior

Conselho Nacional de Desenvolvimento Científico e Tecnológico

Publisher

Wiley

Subject

Periodontics,Cancer Research,Otorhinolaryngology,Oral Surgery,Pathology and Forensic Medicine

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3