In‐field detection and characterization of B/Victoria lineage deletion variant viruses causing early influenza activity and an outbreak in Louisiana, 2019

Author:

Shu Bo1,Wilson Malania M.1,Keller Matthew W.1,Tran Ha2,Sokol Theresa3,Lee Grace3,Rambo‐Martin Benjamin L.1,Kirby Marie K.1ORCID,Hassell Norman1,Haydel Danielle2,Hand Julie3,Wentworth David E.1,Barnes John R.1

Affiliation:

1. Virology, Surveillance and Diagnosis Branch, Influenza Division Centers for Disease Control and Prevention Atlanta Georgia USA

2. Louisiana Department of Health Office of Public Health Laboratory Baton Rouge Louisiana USA

3. Louisiana Department of Health Office of Public Health, Infectious Disease Epidemiology New Orleans Louisiana USA

Abstract

AbstractBackgroundIn 2019, the Louisiana Department of Health reported an early influenza B/Victoria (B/VIC) virus outbreak.MethodAs it was an atypically large outbreak, we deployed to Louisiana to investigate it using genomics and a triplex real‐time RT‐PCR assay to detect three antigenically distinct B/VIC lineage variant viruses.ResultsThe investigation indicated that B/VIC V1A.3 subclade, containing a three amino acid deletion in the hemagglutinin and known to be antigenically distinct to the B/Colorado/06/2017 vaccine virus, was the most prevalent circulating virus within the specimens evaluated (86/88 in real‐time RT‐PCR).ConclusionThis work underscores the value of portable platforms for rapid, onsite pathogen characterization.

Publisher

Wiley

Reference13 articles.

1. WHO.Recommended composition of influenza virus vaccines for use in the 2018–2019 northern hemisphere influenza season.2018. Available from:http://www.who.int/influenza/vaccines/virus/recommendations/201802_recommendation.pdf

2. WHO.Recommended composition of influenza virus vaccines for use in the 2020 southern hemisphere influenza season.2019.https://www.who.int/influenza/vaccines/virus/recommendations/201909_recommendation.pdf?ua=1

3. Early Season Pediatric Influenza B/Victoria Virus Infections Associated with a Recently Emerged Virus Subclade — Louisiana, 2019

4. CDC.5109k. CDC Human Influenza Virus Real‐Time RT‐PCR Diagnostic Panel Influenza B Lineage Genotyping Kit (Ver2).2018.https://www.accessdata.fda.gov/cdrh_docs/reviews/K172091.pdf

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