NFκB dynamics‐dependent epigenetic changes modulate inflammatory gene expression and induce cellular senescence

Author:

Tabata Sho1,Matsuda Keita1,Soeda Shou1,Nagai Kenshiro1,Izumi Yoshihiro2,Takahashi Masatomo2,Motomura Yasutaka345,Ichikawa Nagasato Ayaka1,Moro Kazuyo3456,Bamba Takeshi2,Okada Mariko17ORCID

Affiliation:

1. Laboratory for Cell Systems, Institute for Protein Research Osaka University Suita Japan

2. Division of Metabolomics/Mass Spectrometry Center, Medical Research Center for High Depth Omics, Medical Institute of Bioregulation Kyushu University Fukuoka Japan

3. Laboratory for Innate Immune Systems, Department of Microbiology and Immunology, Graduate School of Medicine Osaka University Suita Japan

4. Laboratory for Innate Immune Systems, Immunology Frontier Research Center (IFReC) Osaka University Suita Japan

5. Laboratory for Innate Immune Systems RIKEN Center for Integrative Medical Sciences (IMS) Yokohama Japan

6. Laboratory for Innate Immune Systems, Graduate School of Frontier Biosciences Osaka University Suita Japan

7. Premium Research Institute for Human Metaverse Medicine (WPI‐PRIMe) Osaka University Suita Japan

Abstract

Upregulation of nuclear factor κB (NFκB) signaling is a hallmark of aging and a major cause of age‐related chronic inflammation. However, its effect on cellular senescence remains unclear. Here, we show that alteration of NFκB nuclear dynamics from oscillatory to sustained by depleting a negative feedback regulator of NFκB pathway, NFκB inhibitor alpha (IκBα), in the presence of tumor necrosis factor α (TNFα) promotes cellular senescence. Sustained NFκB activity enhanced inflammatory gene expression through increased NFκB‐DNA binding and slowed the cell cycle. IκBα protein was decreased under replicative or oxidative stress in vitro. Furthermore, a decrease in IκBα protein and an increase in DNA‐NFκB binding at the transcription start sites of age‐associated genes in aged mouse hearts suggested that nuclear NFκB dynamics may play a critical role in the progression of aging. Our study suggests that nuclear NFκB dynamics‐dependent epigenetic changes regulated over time in a living system, possibly through a decrease in IκBα, enhance the expression of inflammatory genes to advance the cells to a senescent state.

Funder

Japan Agency for Medical Research and Development

Japan Society for the Promotion of Science

Core Research for Evolutional Science and Technology

Uehara Memorial Foundation

Publisher

Wiley

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