Dissecting CASK: Novel splice site variant associated with male MICPCH phenotype

Author:

Silveira Karina C.1ORCID,Ambrose Anastasia1,Athey Taryn12,Taylor Sherryl1,Mercimek‐Andrews Saadet1234ORCID,Kannu Peter12

Affiliation:

1. Department of Medical Genetics, Faculty of Medicine and Dentistry University of Alberta Edmonton Alberta Canada

2. Alberta Health Services Edmonton Zone Alberta Canada

3. Women and Children's Health Research Institute, University of Alberta Edmonton Alberta Canada

4. Neuroscience and Mental Health Institute, University of Alberta Edmonton Alberta Canada

Abstract

AbstractCASK (MIM#300172), encoding a calcium/calmodulin‐dependent serine protein kinase, is crucial for synaptic transmission and gene regulation during neural development. Pathogenic variants of CASK are known to cause several neurodevelopmental disorders, including X‐linked intellectual disability and microcephaly with pontine and cerebellar hypoplasia (MICPCH). This study introduces a novel, de novo synonymous CASK variant (NM_001367721.1: c.1737G>A, p.(Glu579=)), discovered in a male patient diagnosed with MICPCH, characterized by microcephaly, developmental delay, visual impairment, and myoclonic seizures. The variant disrupts a donor splice‐site at the end of exon 18. Transcriptomic analysis of blood identified 12 different CASK transcripts secondary to the synonymous variant. Nearly one third of these transcripts were predicted to result in nonsense mediated decay or protein degradation. Protein modeling revealed structural alterations in the PDZ functional domain of CASK, due to exon 18 deletion. Our findings highlight the utility of transcriptomic analysis in demonstrating the underlying disease mechanism in neurodevelopmental disorders.

Publisher

Wiley

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